Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 0.0e+00 1474.1 911 100.0
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 0.0e+00 1310.0 916 86.5
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 1.0e-280 970.3 942 67.3
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 9.0e-160 568.5 938 51.2
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 1.9e-72 278.5 981 33.3
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 2.4e-72 278.1 982 33.3
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 3.6e-68 264.2 1032 32.4
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 8.9e-67 259.6 976 36.4
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 8.6e-62 243.0 950 31.7
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.8e-60 238.0 924 30.8
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.2e-58 232.6 935 31.1
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 7.6e-58 229.9 964 29.8
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 4.9e-57 227.3 995 34.3
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 1.1e-56 226.1 934 32.3
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 1.1e-56 226.1 934 30.6
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.3e-54 219.2 922 30.5
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 7.3e-53 213.4 908 29.7
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 9.6e-53 213.0 914 31.4
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 9.6e-53 213.0 934 30.1
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 2.1e-52 211.8 934 29.0
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.4e-51 208.4 912 32.0
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 2.4e-51 208.4 914 30.1
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.2e-50 206.1 906 30.5
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.4e-48 199.1 924 29.2
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.3e-46 191.8 330 44.2
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 3.9e-46 191.0 994 30.4
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 8.7e-46 189.9 476 39.1
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 1.1e-45 189.5 904 30.2
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.9e-45 188.7 914 33.7
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 5.6e-45 187.2 953 29.1
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 1.3e-44 186.0 929 31.6
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 2.1e-44 185.3 979 28.9
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 2.8e-44 184.9 901 28.6
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.2e-44 183.7 946 30.5
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 6.2e-44 183.7 927 28.8
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 6.9e-43 180.3 918 29.8
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.5e-42 179.1 952 28.8
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 3.4e-42 177.9 950 30.1
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 1.7e-41 175.6 930 30.2
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 3.8e-41 174.5 977 29.5
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.9e-41 174.1 946 29.8
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.9e-40 172.2 943 29.9
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 3.2e-40 171.4 956 28.3
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 1.2e-39 169.5 907 31.3
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 2.7e-39 168.3 952 29.2
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 4.6e-39 167.5 916 29.3
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.8e-38 165.6 377 40.8
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.0e-38 164.9 947 30.6
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.1e-37 162.9 332 38.0
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.5e-37 161.8 934 27.3
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 4.3e-37 161.0 443 33.2
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 5.6e-37 160.6 907 30.2
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 2.8e-36 158.3 936 27.8
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 6.2e-36 157.1 898 28.1
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 6.2e-36 157.1 954 28.9
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.4e-35 156.0 906 28.1
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 2.4e-35 155.2 906 28.4
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 4.0e-35 154.5 493 33.3
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 5.3e-35 154.1 496 30.6
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 5.3e-35 154.1 937 28.6
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 6.9e-35 153.7 894 27.1
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 2.0e-34 152.1 1034 25.5
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 3.4e-34 151.4 925 29.0
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.0e-33 149.8 328 37.2
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.3e-33 149.4 883 27.5
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 2.2e-33 148.7 907 28.9
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 2.9e-33 148.3 934 27.7
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 8.4e-33 146.7 936 29.4
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.1e-32 146.4 909 29.2
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 3.2e-32 144.8 941 29.8
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 3.2e-32 144.8 941 28.3
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 9.3e-32 143.3 966 28.0
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.2e-31 142.9 919 26.4
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 6.0e-31 140.6 470 30.4
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 3.0e-30 138.3 173 52.0
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 6.7e-30 137.1 953 27.5
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 8.7e-30 136.7 933 27.7
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.9e-29 135.6 957 30.5
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.6e-28 132.5 929 27.3
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 2.8e-28 131.7 966 29.1
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 6.2e-28 130.6 950 25.7
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.1e-27 129.8 953 26.4
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.4e-27 129.4 869 25.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.5e-26 125.9 965 29.4
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 2.6e-26 125.2 982 26.2
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.2e-25 122.1 868 28.5
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 2.9e-25 121.7 974 26.7
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.9e-25 121.7 931 28.2
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 5.0e-25 120.9 931 28.4
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 2.7e-23 115.2 486 31.9
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 4.6e-23 114.4 530 30.9
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 3.3e-21 108.2 291 33.0
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 4.3e-21 107.8 282 34.8
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 5.3e-19 100.9 964 24.8
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.0e-18 99.0 895 25.7
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 3.4e-18 98.2 900 24.4
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.7e-17 95.9 928 28.6
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 8.5e-17 93.6 952 24.7
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 7.2e-16 90.5 896 24.4
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 3.0e-14 85.1 912 26.0
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 3.0e-14 85.1 899 26.1
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 6.7e-14 84.0 991 26.1
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 8.8e-14 83.6 286 30.1
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.1e-13 83.2 929 26.7
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 2.5e-13 82.0 239 35.1
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 5.7e-13 80.9 284 31.3
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 9.7e-13 80.1 902 23.9
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.7e-12 79.3 434 26.5
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.1e-11 76.6 897 24.9
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 2.4e-11 75.5 255 33.3
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.1e-11 75.1 116 42.2
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 5.3e-11 74.3 848 23.7
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 5.3e-11 74.3 847 23.6
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 6.9e-11 73.9 933 25.7
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 1.5e-10 72.8 844 23.2
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 5.9e-10 70.9 913 26.0
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 5.9e-10 70.9 894 23.7
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 7.7e-10 70.5 95 55.8
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.0e-09 70.1 79 59.5
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 1.3e-09 69.7 141 38.3
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 5.0e-09 67.8 104 46.2
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 8.5e-09 67.0 109 50.5
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 5.5e-08 64.3 946 23.9
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 7.2e-08 63.9 77 46.8
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.1e-07 62.4 68 60.3
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 2.7e-07 62.0 411 25.1
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.0e-06 60.1 949 25.8
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 1.0e-06 60.1 234 28.2
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 1.0e-06 60.1 119 37.0
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.0e-06 60.1 87 50.6
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.0e-06 58.5 100 43.0
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 6.7e-06 57.4 965 24.9


User provided reference genes

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