Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 3.8e-117 424.9 218 100.0
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 1.2e-94 350.1 222 82.0
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 4.7e-75 285.0 151 96.7
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 1.6e-70 270.0 155 92.3
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 5.3e-66 255.0 222 64.0
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 9.9e-65 250.8 223 61.9
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 3.8e-64 248.8 221 63.8
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.1e-63 247.3 223 60.5
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 7.9e-62 241.1 221 61.1
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 3.0e-61 239.2 223 60.5
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.1e-60 237.3 223 62.3
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 4.3e-60 235.3 221 60.6
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.3e-59 233.8 221 61.5
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.6e-59 233.4 221 60.2
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 2.8e-59 232.6 220 59.1
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.4e-58 229.6 221 59.3
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.1e-58 229.2 227 59.0
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 5.3e-58 228.4 224 57.6
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 1.2e-57 227.3 223 59.6
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.2e-57 227.3 222 59.9
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.5e-57 226.9 226 60.6
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 3.4e-57 225.7 246 55.3
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 4.5e-57 225.3 224 57.6
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 1.3e-56 223.8 217 59.4
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.2e-56 223.0 229 56.8
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 2.9e-56 222.6 222 59.9
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.9e-56 222.6 224 56.7
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 3.8e-56 222.2 221 58.4
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 6.4e-56 221.5 179 67.6
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 6.4e-56 221.5 223 57.8
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 8.4e-56 221.1 219 55.7
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.9e-55 219.9 228 59.2
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.4e-55 219.5 216 56.9
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 4.2e-55 218.8 223 58.3
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 1.2e-54 217.2 247 51.8
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.6e-54 216.9 220 57.7
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 4.6e-54 215.3 223 55.2
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 6.0e-54 214.9 222 57.7
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 1.0e-53 214.2 223 56.5
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.0e-53 214.2 221 59.7
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.3e-53 213.8 222 58.1
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.8e-53 213.4 222 57.2
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 3.0e-53 212.6 223 54.7
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 3.9e-53 212.2 278 48.2
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.5e-52 210.3 220 55.5
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 4.3e-52 208.8 225 56.4
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 5.6e-52 208.4 222 55.9
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 5.6e-52 208.4 172 65.1
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 9.6e-52 207.6 215 55.8
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 1.3e-51 207.2 215 55.3
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 3.7e-51 205.7 229 55.9
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 3.7e-51 205.7 224 55.4
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 8.1e-51 204.5 234 53.8
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.1e-50 204.1 222 55.9
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 1.1e-50 204.1 217 57.6
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.1e-50 204.1 167 65.9
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.4e-50 203.8 220 53.2
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 5.3e-50 201.8 223 51.6
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 9.0e-50 201.1 226 54.9
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 9.0e-50 201.1 223 53.4
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 9.0e-50 201.1 223 52.5
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 2.0e-49 199.9 227 51.5
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 3.4e-49 199.1 223 52.5
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 4.5e-49 198.7 223 52.0
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 5.8e-49 198.4 224 54.5
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 5.8e-49 198.4 220 51.4
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 5.8e-49 198.4 158 69.0
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.0e-48 197.6 159 66.7
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 1.3e-48 197.2 225 51.6
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 2.2e-48 196.4 154 66.9
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 2.9e-48 196.1 222 54.1
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 3.8e-48 195.7 222 53.2
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 3.8e-48 195.7 222 54.5
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 6.5e-48 194.9 223 52.9
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 8.4e-48 194.5 184 59.8
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 5.5e-47 191.8 220 53.2
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 7.1e-47 191.4 163 63.2
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 7.1e-47 191.4 224 52.7
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 9.3e-47 191.0 224 52.7
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.2e-46 190.7 221 52.5
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.2e-46 190.7 227 50.7
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.6e-46 190.3 217 53.5
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 2.1e-46 189.9 162 61.7
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 3.5e-46 189.1 195 54.9
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 4.6e-46 188.7 195 55.9
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 7.9e-46 188.0 226 51.3
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.3e-45 186.4 220 51.8
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 3.0e-45 186.0 147 66.0
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 3.9e-45 185.7 159 62.3
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 6.7e-45 184.9 213 52.6
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 1.5e-44 183.7 221 51.6
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.9e-44 183.3 212 52.8
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 7.4e-44 181.4 189 55.0
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 7.4e-44 181.4 179 58.1
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 9.6e-44 181.0 189 55.0
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 9.6e-44 181.0 189 55.0
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 9.6e-44 181.0 223 52.9
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 2.8e-43 179.5 158 60.8
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 3.7e-43 179.1 225 51.1
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 3.7e-43 179.1 189 54.0
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 3.7e-43 179.1 143 66.4
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 8.2e-43 177.9 179 58.7
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 1.1e-42 177.6 189 54.0
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.8e-42 176.8 201 50.2
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 3.1e-42 176.0 225 53.8
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 3.4e-41 172.6 232 49.1
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.2e-40 169.9 216 46.8
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 2.7e-38 162.9 221 48.0
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 2.3e-37 159.8 216 48.1
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 3.3e-36 156.0 144 59.7
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 4.3e-36 155.6 139 60.4
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 3.7e-35 152.5 222 46.8
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 8.2e-35 151.4 112 72.3
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 2.4e-34 149.8 135 61.5
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 2.6e-33 146.4 169 50.9
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 4.5e-33 145.6 130 62.3
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 4.5e-33 145.6 178 49.4
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 1.3e-32 144.1 187 50.3
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 1.4e-31 140.6 146 58.9
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 5.5e-31 138.7 150 52.7
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 3.0e-29 132.9 224 42.4
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.1e-28 131.0 145 54.5
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 1.3e-27 127.5 184 42.4
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 4.5e-25 119.0 111 58.6
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.9e-24 116.3 149 53.0
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 3.8e-24 115.9 198 39.4
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 8.5e-24 114.8 155 45.2
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 7.9e-22 108.2 87 64.4
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 1.8e-21 107.1 86 66.3
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 2.0e-20 103.6 140 46.4
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 3.3e-20 102.8 78 71.8
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 8.2e-19 98.2 120 52.5
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 1.4e-18 97.4 169 36.7
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 1.4e-18 97.4 146 47.9
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.4e-18 97.4 170 42.4
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 7.0e-18 95.1 142 45.8
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 4.5e-17 92.4 158 39.9
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.3e-16 90.9 148 43.2
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.3e-16 90.9 199 40.7
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 6.5e-16 88.6 106 47.2
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 1.9e-15 87.0 98 52.0
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 7.2e-15 85.1 87 48.3
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 2.0e-12 77.0 95 48.4
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-12 75.9 70 51.4
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 4.1e-10 69.3 50 70.0
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 1.0e-08 64.7 84 48.8
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.8e-08 62.8 135 34.8
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 3.8e-08 62.8 130 35.4
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 1.5e-07 60.8 149 31.5
ClCG10G010000 Citrullus lanatus HOM05D005311 ORTHO05D006160 2.7e-06 56.6 57 59.6
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 3.6e-06 56.2 74 43.2


User provided reference genes

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