Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 2.6e-112 408.7 202 100.0
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 4.1e-97 358.2 202 89.1
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 1.0e-79 300.4 158 91.8
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 3.4e-67 258.8 151 82.8
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 1.7e-58 229.9 151 74.2
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 3.2e-57 225.7 143 75.5
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 3.2e-57 225.7 140 77.1
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 5.4e-57 224.9 184 62.0
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 7.1e-57 224.6 155 72.3
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 9.2e-57 224.2 143 75.5
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 9.2e-57 224.2 146 74.7
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 4.6e-56 221.9 143 74.8
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 7.8e-56 221.1 150 72.0
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 7.8e-56 221.1 143 74.1
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 1.3e-55 220.3 143 73.4
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 3.9e-55 218.8 146 71.9
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 6.6e-55 218.0 142 75.4
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 8.6e-55 217.6 154 70.1
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 2.5e-54 216.1 143 72.7
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 3.3e-54 215.7 151 71.5
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 4.3e-54 215.3 142 71.1
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 9.5e-54 214.2 154 68.2
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 9.5e-54 214.2 143 74.1
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 1.2e-53 213.8 147 70.7
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 1.6e-53 213.4 147 70.7
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 1.6e-53 213.4 151 67.5
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 2.1e-53 213.0 144 72.2
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 2.8e-53 212.6 151 70.2
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 3.6e-53 212.2 144 72.9
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 3.6e-53 212.2 147 70.1
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 3.6e-53 212.2 148 70.3
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 3.6e-53 212.2 143 70.6
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 6.2e-53 211.5 144 69.4
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 6.2e-53 211.5 150 71.3
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 6.2e-53 211.5 152 69.7
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 8.1e-53 211.1 150 69.3
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 1.1e-52 210.7 189 60.3
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 1.4e-52 210.3 147 70.7
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 5.2e-52 208.4 151 69.5
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 5.2e-52 208.4 148 68.9
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 6.8e-52 208.0 173 64.2
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 8.9e-52 207.6 151 70.2
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 8.9e-52 207.6 151 70.2
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 1.2e-51 207.2 144 68.8
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 1.2e-51 207.2 152 69.7
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 1.2e-51 207.2 140 72.1
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.5e-51 206.8 146 73.3
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 3.4e-51 205.7 143 70.6
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 5.8e-51 204.9 151 65.6
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 5.8e-51 204.9 148 70.3
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 5.8e-51 204.9 148 67.6
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 7.6e-51 204.5 165 63.0
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 7.6e-51 204.5 141 66.7
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 7.6e-51 204.5 143 69.9
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 9.9e-51 204.1 151 68.9
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 9.9e-51 204.1 151 68.9
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 9.9e-51 204.1 151 68.9
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 9.9e-51 204.1 139 71.9
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.7e-50 203.4 141 70.9
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 2.2e-50 203.0 152 69.7
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 2.9e-50 202.6 143 69.9
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 8.3e-50 201.1 134 70.9
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 8.3e-50 201.1 156 66.7
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 8.3e-50 201.1 142 70.4
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 8.3e-50 201.1 141 70.2
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 8.3e-50 201.1 144 71.5
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 5.4e-49 198.4 145 67.6
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 1.2e-48 197.2 163 60.1
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.6e-48 196.8 142 66.9
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 2.7e-48 196.1 135 66.7
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 3.5e-48 195.7 141 68.1
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 4.6e-48 195.3 144 64.6
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 6.0e-48 194.9 145 64.1
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 1.0e-47 194.1 131 73.3
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 1.0e-47 194.1 151 64.2
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 1.3e-47 193.7 141 68.8
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 1.3e-47 193.7 142 66.2
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 1.7e-47 193.4 137 68.6
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 5.1e-47 191.8 141 67.4
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 6.6e-47 191.4 139 70.5
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 1.1e-46 190.7 137 70.8
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 4.3e-46 188.7 138 66.7
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 7.3e-46 188.0 142 62.7
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 1.2e-45 187.2 153 64.7
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.3e-42 177.2 148 59.5
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.7e-42 176.8 148 59.5
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 8.4e-42 174.5 140 58.6
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 9.3e-41 171.0 150 60.0
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 2.1e-40 169.9 154 57.8
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 3.0e-39 166.0 148 60.1
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 9.6e-38 161.0 133 58.6
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 7.6e-35 151.4 136 53.7
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 1.3e-34 150.6 135 54.8
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 2.7e-32 142.9 98 70.4
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 1.7e-31 140.2 178 44.9
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 3.9e-31 139.0 153 49.0
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 8.7e-31 137.9 134 53.0
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 2.1e-29 133.3 152 48.7
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 3.6e-29 132.5 95 68.4
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 6.2e-29 131.7 100 63.0
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 1.1e-28 131.0 102 66.7
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 2.4e-28 129.8 101 65.3
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 2.2e-26 123.2 146 47.9
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 7.9e-24 114.8 142 43.7
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 6.7e-23 111.7 87 64.4
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 2.4e-20 103.2 137 45.3
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 2.9e-18 96.3 138 43.5
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 4.9e-18 95.5 81 58.0
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 9.3e-17 91.3 73 64.4
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 2.1e-16 90.1 109 47.7
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 4.6e-16 89.0 184 32.1
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 6.7e-15 85.1 158 34.8
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 9.3e-09 64.7 103 41.7
Cfa026913 Carpinus fangiana HOM05D001568 ORTHO05D009161 5.1e-07 58.9 190 28.9


User provided reference genes

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