Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 6.7e-25 116.7 65 100.0
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 3.3e-24 114.4 65 96.9
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 3.7e-23 110.9 64 95.3
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.8e-22 108.6 65 92.3
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 2.4e-22 108.2 65 92.3
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 4.0e-22 107.5 66 93.9
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.2e-21 105.9 65 89.2
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 3.4e-21 104.4 65 87.7
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.8e-21 103.6 65 87.7
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 5.8e-21 103.6 67 91.0
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 5.8e-21 103.6 63 92.1
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.0e-20 102.8 65 86.2
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.3e-20 102.4 65 86.2
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.7e-20 102.1 65 84.6
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.8e-20 100.9 67 86.6
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.8e-20 100.9 67 86.6
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.8e-20 100.9 65 86.2
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.9e-20 100.5 67 86.6
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.9e-20 100.5 65 87.7
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.9e-20 100.5 65 87.7
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 6.5e-20 100.1 65 86.2
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 6.5e-20 100.1 67 85.1
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 8.4e-20 99.8 66 87.9
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 8.4e-20 99.8 65 86.2
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.1e-19 99.4 65 81.5
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.5e-19 98.2 66 87.9
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.5e-19 98.2 66 87.9
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.2e-19 97.8 65 83.1
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.2e-19 97.4 66 86.4
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 5.5e-19 97.1 67 85.1
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 5.5e-19 97.1 66 84.8
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.5e-19 97.1 68 83.8
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 7.1e-19 96.7 67 83.6
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 7.1e-19 96.7 66 87.9
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 7.1e-19 96.7 64 87.5
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 9.3e-19 96.3 68 86.8
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 9.3e-19 96.3 66 81.8
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 9.3e-19 96.3 65 81.5
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 1.2e-18 95.9 65 83.1
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.2e-18 95.9 66 84.8
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.2e-18 95.9 63 82.5
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.2e-18 95.9 60 86.7
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 2.7e-18 94.7 64 85.9
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.5e-18 94.4 68 82.4
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 4.6e-18 94.0 62 87.1
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.6e-18 94.0 65 81.5
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 4.6e-18 94.0 71 77.5
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 4.6e-18 94.0 71 77.5
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 4.6e-18 94.0 63 81.0
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 7.9e-18 93.2 64 84.4
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 7.9e-18 93.2 67 80.6
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.0e-17 92.8 64 84.4
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 1.3e-17 92.4 60 86.7
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.3e-17 91.7 63 81.0
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 3.0e-17 91.3 65 76.9
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 5.1e-17 90.5 63 77.8
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 6.7e-17 90.1 59 83.1
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 6.7e-17 90.1 66 77.3
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 6.7e-17 90.1 65 80.0
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 6.7e-17 90.1 65 80.0
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 8.7e-17 89.7 64 81.2
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 1.1e-16 89.4 67 73.1
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.5e-16 89.0 65 73.8
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.5e-16 89.0 65 73.8
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.9e-16 88.6 61 80.3
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.9e-16 88.6 63 76.2
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.3e-16 87.8 60 81.7
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 4.3e-16 87.4 61 83.6
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 1.6e-15 85.5 65 73.8
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 2.1e-15 85.1 59 83.1
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 3.7e-15 84.3 66 75.8
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 3.7e-15 84.3 64 75.0
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 4.8e-15 84.0 65 72.3
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 6.3e-15 83.6 63 73.0
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 6.3e-15 83.6 67 71.6
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 8.2e-15 83.2 59 79.7
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 1.1e-14 82.8 63 73.0
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 1.4e-14 82.4 66 72.7
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.4e-14 82.4 70 71.4
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 5.3e-14 80.5 63 71.4
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 5.3e-14 80.5 70 71.4
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 1.5e-13 79.0 63 69.8
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 2.6e-13 78.2 55 81.8
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 1.3e-12 75.9 62 74.2
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 1.3e-12 75.9 77 67.5
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.7e-12 75.5 58 69.0
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.7e-12 75.5 58 69.0
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 1.7e-12 75.5 63 68.3
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 1.7e-12 75.5 63 68.3
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 2.9e-12 74.7 65 67.7
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 3.8e-12 74.3 58 75.9
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 8.4e-12 73.2 64 68.8
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 8.4e-12 73.2 64 68.8
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 8.4e-12 73.2 64 68.8
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 8.4e-12 73.2 64 68.8
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 8.4e-12 73.2 64 68.8
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 8.4e-12 73.2 52 80.8
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 7.2e-11 70.1 62 69.4
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 1.3e-09 65.9 60 60.0
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 1.3e-09 65.9 60 68.3
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.3e-09 65.9 44 84.1
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.3e-09 65.9 60 60.0
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 2.3e-09 65.1 60 58.3
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 5.1e-09 63.9 60 58.3
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 6.7e-09 63.5 58 60.3
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.7e-09 63.5 62 56.5
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 2.5e-08 61.6 58 60.3
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 4.3e-08 60.8 76 55.3
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 4.3e-08 60.8 54 59.3
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 5.7e-08 60.5 61 60.7
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 9.7e-08 59.7 57 57.9
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 9.7e-08 59.7 52 65.4
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.3e-07 59.3 58 55.2
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.3e-07 59.3 58 55.2
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 1.3e-07 59.3 62 54.8
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.6e-07 58.9 61 54.1
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.8e-07 58.2 55 60.0
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 2.8e-07 58.2 60 55.0
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.7e-07 57.8 58 56.9
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 3.7e-07 57.8 59 54.2
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 4.8e-07 57.4 62 54.8
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 6.3e-07 57.0 58 56.9
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 8.2e-07 56.6 74 52.7
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 8.2e-07 56.6 61 55.7
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.2e-07 56.6 58 53.4
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.1e-06 56.2 58 56.9
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.4e-06 55.8 52 59.6
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.4e-06 55.8 68 50.0
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.4e-06 55.8 68 50.0
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.4e-06 55.8 59 54.2
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.4e-06 55.8 55 60.0
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.4e-06 55.8 54 59.3
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.1e-06 54.7 58 53.4
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 68 48.5
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.1e-06 54.3 60 53.3
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.1e-06 54.3 60 53.3
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 5.3e-06 53.9 61 50.8
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 5.3e-06 53.9 54 57.4
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 6.9e-06 53.5 63 50.8
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 9.0e-06 53.1 61 52.5
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 9.0e-06 53.1 62 51.6


User provided reference genes

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