Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 3.0e-104 381.7 173 100.0
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 8.6e-104 380.2 173 99.4
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 4.3e-103 377.9 173 98.8
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 7.3e-95 350.5 173 89.6
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 1.3e-88 329.7 173 85.5
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 8.4e-83 310.5 181 79.0
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 1.4e-82 309.7 174 81.6
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 1.7e-80 302.8 176 79.0
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 1.7e-80 302.8 157 84.7
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 3.0e-80 302.0 173 79.8
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 5.1e-80 301.2 173 80.3
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 6.6e-80 300.8 173 78.6
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 1.5e-79 299.7 175 80.6
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 4.3e-79 298.1 154 86.4
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 7.3e-79 297.4 173 76.9
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 1.3e-78 296.6 173 76.9
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 2.8e-78 295.4 155 86.5
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 2.8e-78 295.4 173 78.0
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 8.1e-78 293.9 144 90.3
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 2.4e-77 292.4 173 76.9
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 6.9e-77 290.8 176 77.3
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.2e-76 290.0 173 77.5
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.5e-76 289.7 173 77.5
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 3.4e-76 288.5 173 75.7
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 4.4e-76 288.1 139 92.1
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 7.6e-76 287.3 157 80.3
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 7.6e-76 287.3 174 75.3
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 9.9e-76 287.0 173 76.9
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 1.3e-75 286.6 145 87.6
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 1.7e-75 286.2 173 75.1
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 1.7e-75 286.2 145 86.2
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 2.2e-75 285.8 153 83.0
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 2.2e-75 285.8 154 82.5
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 2.9e-75 285.4 175 73.1
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 4.9e-75 284.6 173 75.1
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 6.4e-75 284.3 177 72.9
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 8.4e-75 283.9 177 73.4
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 1.1e-74 283.5 176 74.4
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.1e-74 283.5 145 85.5
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.4e-74 281.2 169 75.1
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 1.2e-73 280.0 163 76.7
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 1.2e-73 280.0 140 88.6
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 6.0e-73 277.7 141 87.9
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 6.0e-73 277.7 136 88.2
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 7.8e-73 277.3 141 87.9
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 1.0e-72 276.9 179 72.1
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 1.3e-72 276.6 174 71.3
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 1.3e-72 276.6 140 86.4
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 1.3e-72 276.6 141 87.2
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 2.3e-72 275.8 172 75.0
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 3.9e-72 275.0 173 74.0
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 3.9e-72 275.0 183 69.9
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 6.6e-72 274.2 140 86.4
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 8.7e-72 273.9 140 85.7
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 8.7e-72 273.9 179 70.4
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 8.7e-72 273.9 141 85.8
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 1.1e-71 273.5 183 71.6
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 1.5e-71 273.1 159 78.0
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 1.9e-71 272.7 141 87.9
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 3.3e-71 271.9 183 69.4
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 3.3e-71 271.9 144 82.6
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 4.3e-71 271.6 169 74.6
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 5.6e-71 271.2 175 70.3
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 9.6e-71 270.4 140 85.0
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 1.3e-70 270.0 166 74.1
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.1e-70 269.2 139 83.5
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 2.8e-70 268.9 156 76.3
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 4.8e-70 268.1 175 70.9
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 4.8e-70 268.1 162 74.1
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 6.2e-70 267.7 175 70.3
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 1.8e-69 266.2 144 79.9
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 1.8e-69 266.2 144 81.2
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 3.1e-69 265.4 170 71.8
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 5.3e-69 264.6 155 78.7
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 6.9e-69 264.2 173 71.1
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 9.0e-69 263.8 173 71.1
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 9.0e-69 263.8 171 73.1
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 1.5e-68 263.1 146 79.5
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 1.5e-68 263.1 154 79.9
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 1.3e-67 260.0 141 82.3
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 2.9e-67 258.8 144 78.5
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 4.9e-67 258.1 150 76.0
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 4.9e-67 258.1 177 66.7
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 4.2e-66 255.0 154 71.4
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 5.4e-66 254.6 132 83.3
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 7.1e-66 254.2 141 80.1
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 7.1e-66 254.2 141 80.1
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 2.1e-65 252.7 173 67.1
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 2.1e-65 252.7 161 68.3
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 7.9e-65 250.8 141 78.0
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.3e-64 250.0 158 73.4
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 2.3e-64 249.2 139 78.4
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 1.1e-63 246.9 142 77.5
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 1.5e-63 246.5 173 64.7
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 1.5e-63 246.5 139 76.3
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 1.9e-63 246.1 144 75.7
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 1.9e-63 246.1 170 66.5
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 2.5e-63 245.7 142 77.5
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 3.3e-63 245.4 142 73.9
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 5.6e-63 244.6 142 76.8
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 5.6e-63 244.6 170 64.7
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 9.6e-63 243.8 177 63.8
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 9.6e-63 243.8 177 63.8
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 1.3e-62 243.4 142 76.1
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.3e-62 243.4 133 82.7
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 3.1e-61 238.8 142 76.1
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 9.0e-61 237.3 155 72.9
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 5.8e-60 234.6 174 60.9
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 2.9e-59 232.3 172 61.0
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 2.7e-57 225.7 145 66.2
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 2.7e-57 225.7 145 66.2
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 2.3e-56 222.6 132 72.7
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 3.9e-56 221.9 137 69.3
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 3.3e-55 218.8 147 67.3
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 4.3e-55 218.4 163 60.1
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 7.4e-55 217.6 148 66.9
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 4.8e-54 214.9 131 71.0
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 1.1e-53 213.8 137 73.0
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 1.5e-52 209.9 127 70.9
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 2.0e-52 209.5 132 66.7
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 7.6e-52 207.6 132 67.4
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 2.2e-51 206.1 140 64.3
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 1.2e-49 200.3 155 57.4
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 4.8e-46 188.3 98 83.7
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 1.8e-45 186.4 136 62.5
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 5.5e-42 174.9 126 58.7
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 9.4e-42 174.1 115 72.2
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 6.1e-33 144.8 159 46.5
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 4.4e-23 112.1 135 45.9
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 1.2e-17 94.0 60 71.7
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 2.1e-09 66.6 121 32.2
Zm00001eb020350 Zea mays HOM05D002394 ORTHO05D002508 3.0e-08 62.8 122 32.8
Sc10g0003270 Simmondsia chinensis HOM05D002394 ORTHO05D002508 6.8e-08 61.6 124 35.5
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 1.2e-07 60.8 126 35.7
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 1.5e-07 60.5 65 52.3
SEGI_33966 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 3.4e-07 59.3 127 33.1
TWI34G1813 Tripterygium wilfordii HOM05D002394 ORTHO05D002508 3.4e-07 59.3 126 37.3
arahy.Tifrunner.gnm1.ann1.56XWA4 Arachis hypogaea HOM05D002394 ORTHO05D002508 5.7e-07 58.5 124 34.7
Hma1.2p1_3742F.1_g337440 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 5.7e-07 58.5 126 36.5
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 9.8e-07 57.8 125 35.2
CDE10G0416 Ceratophyllum demersum HOM05D002394 ORTHO05D002508 1.3e-06 57.4 125 32.0
EL10Ac2g03083 Beta vulgaris HOM05D002394 ORTHO05D002508 1.7e-06 57.0 126 34.1
COL.COLO4_21379 Corchorus olitorius HOM05D002394 ORTHO05D002508 1.7e-06 57.0 126 34.1
Glyma.19G027700 Glycine max HOM05D002394 ORTHO05D002508 1.7e-06 57.0 123 34.1
Nitab4.5_0008213g0030 Nicotiana tabacum HOM05D002394 ORTHO05D002508 1.7e-06 57.0 127 33.9
Hma1.2p1_1741F.1_g300110 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 2.2e-06 56.6 126 35.7
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 2.2e-06 56.6 125 35.2
Hma1.2p1_0221F.1_g093090 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 2.8e-06 56.2 126 35.7
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 3.7e-06 55.8 126 34.9
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 3.7e-06 55.8 126 34.9
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 3.7e-06 55.8 126 34.9
Glyma.13G058800 Glycine max HOM05D002394 ORTHO05D002508 3.7e-06 55.8 123 34.1
Lj2g0005081 Lotus japonicus HOM05D002394 ORTHO05D002508 4.9e-06 55.5 126 34.9
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 8.3e-06 54.7 126 34.1
Phvul.004G033800 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 8.3e-06 54.7 123 33.3
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 8.3e-06 54.7 128 32.8


User provided reference genes

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