Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 4.1e-43 177.6 84 100.0
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 1.5e-40 169.1 84 94.0
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 1.9e-40 168.7 84 94.0
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 4.3e-40 167.5 84 92.9
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 1.2e-39 166.0 84 91.7
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 4.9e-36 154.1 84 83.3
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 2.4e-35 151.8 85 82.4
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 9.2e-35 149.8 84 83.3
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 1.2e-34 149.4 83 84.3
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 1.6e-34 149.1 83 83.1
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 2.0e-34 148.7 85 83.5
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 2.7e-34 148.3 84 82.1
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 3.5e-34 147.9 84 82.1
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.5e-34 147.9 84 82.1
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.5e-34 147.9 84 82.1
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 3.5e-34 147.9 84 82.1
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 5.9e-34 147.1 84 84.5
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 7.8e-34 146.7 76 86.8
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 7.8e-34 146.7 76 86.8
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 7.8e-34 146.7 76 86.8
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 1.0e-33 146.4 84 83.3
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.0e-33 146.4 84 83.3
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.0e-33 146.4 84 83.3
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.0e-33 146.4 84 83.3
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.0e-33 146.4 75 86.7
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.0e-33 146.4 75 86.7
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.0e-33 146.4 75 86.7
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.0e-33 146.4 82 82.9
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 1.0e-33 146.4 82 84.1
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 1.7e-33 145.6 82 81.7
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 1.7e-33 145.6 75 88.0
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 2.3e-33 145.2 75 88.0
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 2.3e-33 145.2 82 82.9
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 3.0e-33 144.8 84 81.0
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 3.9e-33 144.4 82 81.7
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 5.0e-33 144.1 75 86.7
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 5.0e-33 144.1 75 86.7
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 6.6e-33 143.7 82 80.5
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 6.6e-33 143.7 82 80.5
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 6.6e-33 143.7 82 80.5
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 6.6e-33 143.7 84 79.8
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 6.6e-33 143.7 84 79.8
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 6.6e-33 143.7 82 79.3
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 8.6e-33 143.3 74 86.5
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 8.6e-33 143.3 74 86.5
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 8.6e-33 143.3 83 81.9
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 8.6e-33 143.3 75 85.3
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.1e-32 142.9 76 85.5
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 1.1e-32 142.9 75 85.3
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 1.1e-32 142.9 81 84.0
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 1.5e-32 142.5 73 86.3
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 1.5e-32 142.5 75 84.0
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 1.5e-32 142.5 74 86.5
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 1.9e-32 142.1 82 80.5
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.9e-32 142.1 82 80.5
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 1.9e-32 142.1 75 85.3
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 1.9e-32 142.1 84 78.6
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 1.9e-32 142.1 75 85.3
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 1.9e-32 142.1 75 85.3
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 1.9e-32 142.1 82 80.5
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 1.9e-32 142.1 75 85.3
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 2.5e-32 141.7 83 80.7
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 2.5e-32 141.7 83 80.7
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 2.5e-32 141.7 83 80.7
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 2.5e-32 141.7 83 80.7
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 2.5e-32 141.7 83 80.7
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 2.5e-32 141.7 83 80.7
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 2.5e-32 141.7 83 80.7
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 2.5e-32 141.7 82 76.8
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 2.5e-32 141.7 83 80.7
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 2.5e-32 141.7 71 90.1
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 2.5e-32 141.7 82 80.5
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.5e-32 141.7 83 80.7
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 2.5e-32 141.7 73 84.9
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 3.3e-32 141.4 82 81.7
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 3.3e-32 141.4 82 80.5
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 3.3e-32 141.4 76 82.9
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 3.3e-32 141.4 87 77.0
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 3.3e-32 141.4 82 79.3
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 4.3e-32 141.0 83 79.5
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 4.3e-32 141.0 73 87.7
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 5.6e-32 140.6 75 84.0
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 5.6e-32 140.6 80 82.5
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 5.6e-32 140.6 83 79.5
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 5.6e-32 140.6 73 84.9
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 5.6e-32 140.6 74 85.1
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 5.6e-32 140.6 74 85.1
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 5.6e-32 140.6 74 85.1
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 5.6e-32 140.6 83 79.5
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 5.6e-32 140.6 74 85.1
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 5.6e-32 140.6 82 78.0
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 7.3e-32 140.2 82 79.3
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 7.3e-32 140.2 74 83.8
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 9.5e-32 139.8 83 78.3
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 9.5e-32 139.8 74 83.8
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 1.2e-31 139.4 83 78.3
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 1.2e-31 139.4 74 83.8
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 1.6e-31 139.0 74 83.8
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.6e-31 139.0 74 83.8
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.6e-31 139.0 72 86.1
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.6e-31 139.0 74 82.4
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 2.1e-31 138.7 74 82.4
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 2.1e-31 138.7 76 81.6
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 2.1e-31 138.7 87 74.7
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 3.6e-31 137.9 82 78.0
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 3.6e-31 137.9 74 83.8
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 3.6e-31 137.9 82 78.0
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 4.7e-31 137.5 82 78.0
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 6.2e-31 137.1 74 82.4
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 6.2e-31 137.1 76 80.3
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 8.0e-31 136.7 79 78.5
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 1.4e-30 136.0 71 84.5
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 1.8e-30 135.6 102 64.7
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 1.8e-30 135.6 75 80.0
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 2.3e-30 135.2 74 82.4
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 3.1e-30 134.8 68 86.8
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 4.0e-30 134.4 82 75.6
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 2.6e-29 131.7 65 87.7
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 3.4e-29 131.3 103 65.0
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.3e-28 129.4 63 88.9
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 8.3e-28 126.7 61 88.5
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 1.4e-27 125.9 62 87.1
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 1.4e-27 125.9 62 87.1
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 4.1e-27 124.4 61 86.9
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 5.4e-27 124.0 60 86.7
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 5.4e-27 124.0 73 75.3
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 9.2e-27 123.2 66 83.3
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 2.0e-26 122.1 108 58.3
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 5.0e-25 117.5 73 75.3
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.8e-22 109.0 64 76.6
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 5.2e-22 107.5 50 88.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 8.9e-22 106.7 50 88.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 8.9e-22 106.7 50 86.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 3.4e-21 104.8 50 86.0
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 6.4e-20 100.5 79 62.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 8.3e-20 100.1 49 81.6
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 4.1e-19 97.8 59 83.1
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 2.1e-18 95.5 80 56.2
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 4.6e-18 94.4 70 62.9
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 3.9e-17 91.3 82 52.4
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 3.9e-17 91.3 75 53.3
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 5.4e-11 70.9 86 45.3
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 1.1e-06 56.6 29 79.3


User provided reference genes

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