Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017957.2 Cucumis melo HOM05D002674 ORTHO05D008041 2.4e-48 195.3 105 100.0
CsaV3_4G000790 Cucumis sativus L. HOM05D002674 ORTHO05D008041 2.9e-46 188.3 105 96.2
ClCG10G010910 Citrullus lanatus HOM05D002674 ORTHO05D008041 1.1e-45 186.4 103 95.1
Sed0019690 Sechium edule HOM05D002674 ORTHO05D008041 1.6e-44 182.6 105 92.4
Dinv19696 Davidia involucrata HOM05D002674 ORTHO05D008041 5.5e-37 157.5 102 76.5
Thecc.01G300000 Theobroma cacao HOM05D002674 ORTHO05D008041 2.1e-36 155.6 103 75.7
Gohir.D08G085400 Gossypium hirsutum HOM05D002674 ORTHO05D008041 3.6e-36 154.8 103 75.7
Sabra02G0154500 Salix brachista HOM05D002674 ORTHO05D008041 3.6e-36 154.8 101 78.2
Gohir.A08G076000 Gossypium hirsutum HOM05D002674 ORTHO05D008041 4.7e-36 154.5 103 74.8
ECA247G1692 Erigeron canadensis HOM05D002674 ORTHO05D008041 1.8e-35 152.5 103 74.8
HanXRQChr15g0465661 Helianthus annuus HOM05D002674 ORTHO05D008041 1.8e-35 152.5 105 75.2
CiPaw.07G108500 Carya illinoinensis HOM05D002674 ORTHO05D008041 2.3e-35 152.1 100 75.0
Potri.014G129800 Populus trichocarpa HOM05D002674 ORTHO05D008041 2.3e-35 152.1 101 76.2
COL.COLO4_23349 Corchorus olitorius HOM05D002674 ORTHO05D008041 6.7e-35 150.6 103 73.8
TAR636G2182 Trochodendron aralioides HOM05D002674 ORTHO05D008041 1.1e-34 149.8 101 75.2
TWI14G1447 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 1.5e-34 149.4 103 73.8
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 2.6e-34 148.7 101 73.3
Ciclev10022953m.g Citrus clementina HOM05D002674 ORTHO05D008041 3.3e-34 148.3 103 71.8
QL12p028510 Quercus lobata HOM05D002674 ORTHO05D008041 3.3e-34 148.3 101 73.3
Atru.chr5.1150 Acer truncatum HOM05D002674 ORTHO05D008041 4.4e-34 147.9 105 72.4
TWI23G1311 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 4.4e-34 147.9 103 73.8
Atru.chr7.1564 Acer truncatum HOM05D002674 ORTHO05D008041 7.4e-34 147.1 103 71.8
GSVIVG01028011001 Vitis vinifera HOM05D002674 ORTHO05D008041 7.4e-34 147.1 103 72.8
CANSAT25G0502 Cannabis sativa HOM05D002674 ORTHO05D008041 9.7e-34 146.7 100 74.0
Cpa.g.sc9.264 Carica papaya HOM05D002674 ORTHO05D008041 1.3e-33 146.4 102 74.5
Oeu048338.1 Olea europaea HOM05D002674 ORTHO05D008041 2.2e-33 145.6 103 69.9
FvH4_2g25692 Fragaria vesca HOM05D002674 ORTHO05D008041 2.8e-33 145.2 102 74.5
Cc01_g20820 Coffea canephora HOM05D002674 ORTHO05D008041 3.7e-33 144.8 102 73.5
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 3.7e-33 144.8 103 70.9
CDE12G0521 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 4.8e-33 144.4 102 72.5
MD11G1310400 Malus domestica HOM05D002674 ORTHO05D008041 4.8e-33 144.4 98 75.5
SalBow3G0298 Salvia bowleyana HOM05D002674 ORTHO05D008041 6.3e-33 144.1 98 71.4
MSTRG.21632 Avicennia marina HOM05D002674 ORTHO05D008041 1.1e-32 143.3 103 68.9
FvH4_3g17380 Fragaria vesca HOM05D002674 ORTHO05D008041 1.1e-32 143.3 99 74.7
FAN11G2206 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.1e-32 143.3 99 74.7
FAN21G2416 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.1e-32 143.3 99 74.7
SGA_v2.0_scaffold2G01395 Striga asiatica HOM05D002674 ORTHO05D008041 1.1e-32 143.3 103 69.9
Haze_04934 Corylus avellana HOM05D002674 ORTHO05D008041 1.8e-32 142.5 98 70.4
Manes.01G218700 Manihot esculenta HOM05D002674 ORTHO05D008041 1.8e-32 142.5 103 71.8
Nn3g21482 Nelumbo nucifera HOM05D002674 ORTHO05D008041 1.8e-32 142.5 100 74.0
Prupe.8G261100 Prunus persica HOM05D002674 ORTHO05D008041 1.8e-32 142.5 102 72.5
RcHm_v2.0_Chr6g0293971 Rosa chinensis HOM05D002674 ORTHO05D008041 1.8e-32 142.5 102 72.5
FAN16G1943 Fragaria x ananassa HOM05D002674 ORTHO05D008041 3.1e-32 141.7 99 73.7
unitig_61.g26303 Utricularia gibba HOM05D002674 ORTHO05D008041 4.1e-32 141.4 103 69.9
MD03G1287900 Malus domestica HOM05D002674 ORTHO05D008041 9.1e-32 140.2 100 72.0
Cfa005915 Carpinus fangiana HOM05D002674 ORTHO05D008041 1.2e-31 139.8 98 69.4
AUR62008625 Chenopodium quinoa HOM05D002674 ORTHO05D008041 1.2e-31 139.8 103 68.0
Eucgr.H01115 Eucalyptus grandis HOM05D002674 ORTHO05D008041 1.2e-31 139.8 102 68.6
FAN25G1445 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.6e-31 139.4 99 72.7
AUR62033146 Chenopodium quinoa HOM05D002674 ORTHO05D008041 2.0e-31 139.0 103 68.0
Actinidia32214 Actinidia chinensis HOM05D002674 ORTHO05D008041 2.6e-31 138.7 101 69.3
Aqoxy5G00753 Aquilegia oxysepala HOM05D002674 ORTHO05D008041 2.6e-31 138.7 102 71.6
Aa31LG10G16570 Aethionema arabicum HOM05D002674 ORTHO05D008041 4.5e-31 137.9 100 71.0
AT3G62810 Arabidopsis thaliana HOM05D002674 ORTHO05D008041 5.9e-31 137.5 100 73.0
EL10Ac7g17468 Beta vulgaris HOM05D002674 ORTHO05D008041 5.9e-31 137.5 103 66.0
Carub.0005s2947 Capsella rubella HOM05D002674 ORTHO05D008041 5.9e-31 137.5 100 72.0
MBI19_g25355_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D008041 5.9e-31 137.5 98 71.4
PGR119G0614 Punica granatum HOM05D002674 ORTHO05D008041 1.0e-30 136.7 101 67.3
Sp5g00710 Schrenkiella parvula HOM05D002674 ORTHO05D008041 1.0e-30 136.7 100 70.0
AL5G45590 Arabidopsis lyrata HOM05D002674 ORTHO05D008041 1.7e-30 136.0 100 72.0
arahy.Tifrunner.gnm1.ann1.9NAT9F Arachis hypogaea HOM05D002674 ORTHO05D008041 1.7e-30 136.0 105 67.6
arahy.Tifrunner.gnm1.ann1.UV7MYU Arachis hypogaea HOM05D002674 ORTHO05D008041 1.7e-30 136.0 105 67.6
BcaC02g10314 Brassica carinata HOM05D002674 ORTHO05D008041 1.7e-30 136.0 99 70.7
A04p00510 Brassica napus HOM05D002674 ORTHO05D008041 1.7e-30 136.0 99 70.7
BolC4t24576H Brassica oleracea HOM05D002674 ORTHO05D008041 1.7e-30 136.0 99 70.7
BraA04t15771Z Brassica rapa HOM05D002674 ORTHO05D008041 1.7e-30 136.0 99 70.7
ATR0796G030 Amborella trichopoda HOM05D002674 ORTHO05D008041 2.2e-30 135.6 105 66.7
Hund18156 Selenicereus undatus HOM05D002674 ORTHO05D008041 2.9e-30 135.2 102 67.6
Phvul.007G146200 Phaseolus vulgaris HOM05D002674 ORTHO05D008041 5.0e-30 134.4 101 69.3
VMungo0720G1979 Vigna mungo HOM05D002674 ORTHO05D008041 5.0e-30 134.4 101 70.3
BcaC07g42733 Brassica carinata HOM05D002674 ORTHO05D008041 1.1e-29 133.3 99 69.7
CAN.G472.1 Capsicum annuum HOM05D002674 ORTHO05D008041 1.1e-29 133.3 100 65.0
Glyma.10G018500 Glycine max HOM05D002674 ORTHO05D008041 1.5e-29 132.9 103 65.0
PGR044G1069 Punica granatum HOM05D002674 ORTHO05D008041 1.5e-29 132.9 98 69.4
Solyc09g075100.3 Solanum lycopersicum HOM05D002674 ORTHO05D008041 1.5e-29 132.9 100 65.0
Sopen09g029920 Solanum pennellii HOM05D002674 ORTHO05D008041 1.5e-29 132.9 100 65.0
CSS0018179 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D008041 2.5e-29 132.1 101 64.4
PGSC0003DMG400011376 Solanum tuberosum HOM05D002674 ORTHO05D008041 2.5e-29 132.1 100 65.0
BcaB02g08097 Brassica carinata HOM05D002674 ORTHO05D008041 3.2e-29 131.7 99 69.7
Lj5g0008305 Lotus japonicus HOM05D002674 ORTHO05D008041 3.2e-29 131.7 105 64.8
Peaxi162Scf00001g00445 Petunia axillaris HOM05D002674 ORTHO05D008041 3.2e-29 131.7 100 64.0
Migut.D00216 Erythranthe guttata HOM05D002674 ORTHO05D008041 4.2e-29 131.3 100 64.0
Thhalv10006327m.g Eutrema salsugineum HOM05D002674 ORTHO05D008041 5.5e-29 131.0 99 67.7
Nitab4.5_0001879g0010 Nicotiana tabacum HOM05D002674 ORTHO05D008041 5.5e-29 131.0 100 64.0
Nitab4.5_0008207g0030 Nicotiana tabacum HOM05D002674 ORTHO05D008041 5.5e-29 131.0 100 64.0
Psat6g166360 Pisum sativum HOM05D002674 ORTHO05D008041 1.2e-28 129.8 101 67.3
C04p30420 Brassica napus HOM05D002674 ORTHO05D008041 2.1e-28 129.0 99 67.7
Lalb_Chr21g0306851 Lupinus albus HOM05D002674 ORTHO05D008041 2.7e-28 128.6 104 64.4
CARHR173080 Cardamine hirsuta HOM05D002674 ORTHO05D008041 6.1e-28 127.5 102 68.6
Ca_10338_v3 Cicer arietinum L. HOM05D002674 ORTHO05D008041 6.1e-28 127.5 101 67.3
TPR.G34008 Trifolium pratense HOM05D002674 ORTHO05D008041 6.1e-28 127.5 103 67.0
BraA09t40877Z Brassica rapa HOM05D002674 ORTHO05D008041 1.4e-27 126.3 99 68.7
PSO210G6076 Papaver somniferum HOM05D002674 ORTHO05D008041 1.8e-27 125.9 100 63.0
Rhsim13G0010400 Rhododendron simsii HOM05D002674 ORTHO05D008041 1.8e-27 125.9 117 59.0
PSO832G1306 Papaver somniferum HOM05D002674 ORTHO05D008041 2.3e-27 125.6 100 64.0
A09p54660 Brassica napus HOM05D002674 ORTHO05D008041 3.0e-27 125.2 99 68.7
Medtr1g088550 Medicago truncatula HOM05D002674 ORTHO05D008041 4.0e-27 124.8 103 62.1
SEGI_38702 Sequoiadendron giganteum HOM05D002674 ORTHO05D008041 1.7e-25 119.4 103 60.2
Duzib138G1033 Durio zibethinus HOM05D002674 ORTHO05D008041 1.8e-24 115.9 79 75.9
Sabra14G0096400 Salix brachista HOM05D002674 ORTHO05D008041 1.8e-24 115.9 98 60.2
Gorai.004G089900 Gossypium raimondii HOM05D002674 ORTHO05D008041 3.1e-24 115.2 79 75.9
Lsat_1_v5_gn_9_5640 Lactuca sativa HOM05D002674 ORTHO05D008643 1.2e-23 113.2 79 74.7
Oeu010670.1 Olea europaea HOM05D002674 ORTHO05D008041 2.7e-23 112.1 103 58.3
vmacro02452 Vaccinium macrocarpon HOM05D002674 ORTHO05D008041 3.5e-23 111.7 154 46.1
Os05g0363600 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D008041 4.5e-23 111.3 103 58.3
CDE01G0164 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 5.9e-23 110.9 81 70.4
HPP92_013721 Vanilla planifolia HOM05D002674 ORTHO05D008041 5.0e-22 107.8 177 40.1
SalBow5G2922 Salvia bowleyana HOM05D002674 ORTHO05D008041 6.5e-22 107.5 76 69.7
SalBow3G1515 Salvia bowleyana HOM05D002674 ORTHO05D008041 8.5e-22 107.1 78 67.9
Haze_04957 Corylus avellana HOM05D002674 ORTHO05D008041 1.1e-21 106.7 81 69.1
Zm00001eb346590 Zea mays HOM05D002674 ORTHO05D008041 4.2e-21 104.8 103 56.3
Lalb_Chr02g0143261 Lupinus albus HOM05D000266 ORTHO05D008041 3.6e-20 101.7 95 58.9
Hma1.2p1_0491F.1_g164520 Hydrangea macrophylla HOM05D002674 ORTHO05D008041 1.5e-18 96.3 74 64.9
Sc24g0003780 Simmondsia chinensis HOM05D002674 ORTHO05D008041 2.0e-18 95.9 78 62.8
Glyma.02G018200 Glycine max HOM05D002674 ORTHO05D008041 4.4e-18 94.7 77 63.6
DCAR_002831 Daucus carota HOM05D000067 ORTHO05D001807 5.7e-18 94.4 76 65.8
C08p37560 Brassica napus HOM05D002674 ORTHO05D008041 8.3e-17 90.5 74 64.9
Mapoly0061s0038 Marchantia polymorpha HOM05D002674 ORTHO05D008041 7.0e-16 87.4 103 46.6
Ah.15g093210 Amaranthus hybridus HOM05D002674 ORTHO05D008041 1.6e-15 86.3 79 57.0
Pp3c9_7930 Physcomitrium patens HOM05D002674 ORTHO05D008041 2.2e-14 82.4 92 50.0
AagrBONN_evm.TU.Sc2ySwM_362.373 Anthoceros agrestis HOM05D002674 ORTHO05D008041 5.5e-13 77.8 101 44.6
BcaC07g40760 Brassica carinata HOM05D002674 ORTHO05D008041 5.7e-10 67.8 70 51.4
BolC8t51336H Brassica oleracea HOM05D002674 ORTHO05D008041 5.7e-10 67.8 70 51.4
RcHm_v2.0_Chr2g0146991 Rosa chinensis HOM05D002674 ORTHO05D008041 1.8e-08 62.8 54 64.8
MCO07G465 Micromonas commoda HOM05D002674 ORTHO05D008041 2.0e-07 59.3 92 42.4
CBR_g24042 Chara braunii HOM05D002674 ORTHO05D008041 2.7e-07 58.9 77 42.9
PSO832G3862 Papaver somniferum HOM05D001297 ORTHO05D001135 1.0e-06 57.0 70 48.6
Peaxi162Scf00545g00027 Petunia axillaris HOM05D002674 ORTHO05D008041 1.0e-06 57.0 50 50.0
Cre07.g332150 Chlamydomonas reinhardtii HOM05D002674 ORTHO05D008041 2.9e-06 55.5 80 36.2


User provided reference genes

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