Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017886.2 Cucumis melo HOM05D002758 ORTHO05D002885 2.7e-41 172.2 130 100.0
CsaV3_4G001540 Cucumis sativus L. HOM05D002758 ORTHO05D002885 3.4e-36 155.2 133 92.5
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 5.1e-32 141.4 134 73.9
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 3.7e-27 125.2 130 64.6
Sed0016112 Sechium edule HOM05D002758 ORTHO05D002885 1.8e-21 106.3 130 63.1
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 1.3e-19 100.1 134 57.5
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 1.3e-19 100.1 133 54.1
BcaB02g10984 Brassica carinata HOM05D002758 ORTHO05D002885 1.7e-19 99.8 133 58.6
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 1.7e-19 99.8 135 55.6
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 1.7e-19 99.8 135 55.6
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 3.2e-18 95.5 135 49.6
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 5.4e-18 94.7 134 54.5
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 9.2e-18 94.0 135 48.9
Carub.0001s4153 Capsella rubella HOM05D002758 ORTHO05D002885 9.2e-18 94.0 134 57.5
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 9.2e-18 94.0 132 44.7
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 1.2e-17 93.6 133 45.9
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 1.6e-17 93.2 133 53.4
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 3.5e-17 92.0 134 53.7
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 4.6e-17 91.7 135 46.7
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 6.0e-17 91.3 134 53.0
AT1G52565 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 6.0e-17 91.3 132 56.8
Sp1g39120 Schrenkiella parvula HOM05D002758 ORTHO05D002885 6.0e-17 91.3 135 54.1
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 1.0e-16 90.5 134 47.0
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 1.0e-16 90.5 135 51.1
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 1.7e-16 89.7 135 45.9
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 1.7e-16 89.7 133 54.1
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 1.7e-16 89.7 133 49.6
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 3.0e-16 89.0 133 43.6
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 3.9e-16 88.6 131 43.5
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.9e-16 88.6 134 44.0
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 8.7e-16 87.4 141 41.8
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 8.7e-16 87.4 140 44.3
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.1e-15 87.0 133 43.6
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 2.5e-15 85.9 143 46.9
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 4.3e-15 85.1 142 45.1
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 2.1e-14 82.8 135 40.0
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 2.8e-14 82.4 136 43.4
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 2.8e-14 82.4 129 53.5
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.6e-14 82.0 133 42.9
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.6e-14 82.0 133 42.9
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 3.6e-14 82.0 133 42.9
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 8.1e-14 80.9 133 39.8
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 8.1e-14 80.9 134 42.5
C06p07990 Brassica napus HOM05D002758 ORTHO05D002885 1.1e-13 80.5 71 57.7
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.1e-13 80.5 133 42.1
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.1e-13 80.5 135 40.0
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 1.4e-13 80.1 128 43.8
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.8e-13 79.7 131 44.3
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 2.4e-13 79.3 134 41.8
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 4.0e-13 78.6 130 41.5
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 5.3e-13 78.2 132 43.2
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 5.3e-13 78.2 132 43.2
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 6.9e-13 77.8 128 41.4
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 6.9e-13 77.8 130 41.5
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 2.0e-12 76.3 131 41.2
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 2.6e-12 75.9 130 40.8
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 4.4e-12 75.1 146 39.0
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 5.8e-12 74.7 132 41.7
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 5.8e-12 74.7 133 41.4
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 5.8e-12 74.7 137 38.0
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 1.3e-11 73.6 132 42.4
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 1.3e-11 73.6 141 39.0
Aa31LG8G2960 Aethionema arabicum HOM05D002758 ORTHO05D002885 2.2e-11 72.8 141 46.8
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 2.2e-11 72.8 132 43.2
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 2.2e-11 72.8 135 40.0
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 3.8e-11 72.0 129 41.1
BcaB04g20905 Brassica carinata HOM05D002758 ORTHO05D002885 8.4e-11 70.9 129 41.9
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.1e-10 70.5 139 40.3
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 1.1e-10 70.5 142 41.5
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 1.4e-10 70.1 135 40.0
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 1.4e-10 70.1 135 40.0
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 1.4e-10 70.1 135 40.0
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.9e-10 69.7 138 37.7
A01p38340 Brassica napus HOM05D002758 ORTHO05D002885 1.9e-10 69.7 135 56.3
BraA01t03885Z Brassica rapa HOM05D002758 ORTHO05D002885 1.9e-10 69.7 135 55.6
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 1.9e-10 69.7 136 39.0
Sp3g14090 Schrenkiella parvula HOM05D002758 ORTHO05D002885 1.9e-10 69.7 133 46.6
Aa31LG10G2440 Aethionema arabicum HOM05D002758 ORTHO05D002885 2.4e-10 69.3 155 39.4
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 2.4e-10 69.3 137 38.7
ECA234G1831 Erigeron canadensis HOM05D002758 ORTHO05D002885 2.4e-10 69.3 137 38.7
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 3.2e-10 68.9 132 38.6
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 3.2e-10 68.9 144 39.6
Migut.I00776 Erythranthe guttata HOM05D002758 ORTHO05D002885 4.2e-10 68.6 138 35.5
BcaB06g25687 Brassica carinata HOM05D002758 ORTHO05D002885 5.4e-10 68.2 135 50.4
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 5.4e-10 68.2 133 39.8
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 7.1e-10 67.8 134 41.8
Duzib168G0478 Durio zibethinus HOM05D002758 ORTHO05D002885 7.1e-10 67.8 143 44.8
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 7.1e-10 67.8 143 39.2
SalBow1G1971 Salvia bowleyana HOM05D002758 ORTHO05D002885 9.3e-10 67.4 124 41.9
MSTRG.10674 Avicennia marina HOM05D002758 ORTHO05D002885 1.6e-09 66.6 131 45.8
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 1.6e-09 66.6 140 37.9
Peaxi162Scf00332g00756 Petunia axillaris HOM05D002758 ORTHO05D002885 1.6e-09 66.6 137 38.7
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 1.6e-09 66.6 69 50.7
BolC5t33807H Brassica oleracea HOM05D002758 ORTHO05D002885 2.7e-09 65.9 135 38.5
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 2.7e-09 65.9 139 38.1
BcaC05g28933 Brassica carinata HOM05D002758 ORTHO05D002885 3.5e-09 65.5 135 39.3
A05p33610 Brassica napus HOM05D002758 ORTHO05D002885 3.5e-09 65.5 135 39.3
C05p50610 Brassica napus HOM05D002758 ORTHO05D002885 3.5e-09 65.5 135 39.3
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 3.5e-09 65.5 131 44.3
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.5e-09 65.5 135 38.5
BraA05t22185Z Brassica rapa HOM05D002758 ORTHO05D002885 4.6e-09 65.1 135 37.8
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.3e-08 63.5 128 37.5
Nitab4.5_0000028g0360 Nicotiana tabacum HOM05D002758 ORTHO05D002885 1.3e-08 63.5 134 35.8
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 1.3e-08 63.5 138 36.2
arahy.Tifrunner.gnm1.ann1.3WRP69 Arachis hypogaea HOM05D002758 ORTHO05D002885 1.7e-08 63.2 135 51.1
arahy.Tifrunner.gnm1.ann1.A8WRUN Arachis hypogaea HOM05D002758 ORTHO05D002885 1.7e-08 63.2 135 51.1
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.7e-08 63.2 144 36.1
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 1.7e-08 63.2 133 33.8
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.3e-08 62.8 128 39.8
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 2.3e-08 62.8 127 35.4
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 2.3e-08 62.8 134 38.1
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 2.3e-08 62.8 135 37.8
Lsat_1_v5_gn_5_95300 Lactuca sativa HOM05D002758 ORTHO05D002885 3.9e-08 62.0 133 37.6
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 5.1e-08 61.6 137 35.0
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 6.6e-08 61.2 137 36.5
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 6.6e-08 61.2 137 36.5
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 6.6e-08 61.2 137 36.5
Peaxi162Scf00046g00524 Petunia axillaris HOM05D002758 ORTHO05D002885 8.7e-08 60.8 130 39.2
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.1e-07 60.5 132 37.9
HanXRQChr10g0315561 Helianthus annuus HOM05D002758 ORTHO05D002885 1.5e-07 60.1 134 42.5
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 1.5e-07 60.1 134 34.3
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 1.5e-07 60.1 132 34.8
HanXRQChr12g0356261 Helianthus annuus HOM05D002758 ORTHO05D002885 1.9e-07 59.7 131 38.9
Sed0027515 Sechium edule HOM05D002758 ORTHO05D002885 1.9e-07 59.7 123 35.8
Solyc03g116630.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.9e-07 59.7 139 39.6
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 2.5e-07 59.3 125 36.0
HanXRQChr05g0138371 Helianthus annuus HOM05D002758 ORTHO05D002885 2.5e-07 59.3 130 43.1
HanXRQChr05g0140201 Helianthus annuus HOM05D002758 ORTHO05D002885 2.5e-07 59.3 130 43.1
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 3.3e-07 58.9 138 33.3
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 3.3e-07 58.9 135 40.0
Psat5g302120 Pisum sativum HOM05D002758 ORTHO05D002885 3.3e-07 58.9 135 35.6
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 4.3e-07 58.5 69 49.3
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 5.6e-07 58.2 138 35.5
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 5.6e-07 58.2 142 33.1
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 7.3e-07 57.8 134 38.1
Lsat_1_v5_gn_8_58521 Lactuca sativa HOM05D002758 ORTHO05D002885 7.3e-07 57.8 134 41.8
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 7.3e-07 57.8 140 31.4
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 9.6e-07 57.4 123 38.2
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.3e-06 57.0 138 35.5
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 1.3e-06 57.0 131 32.8
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 1.3e-06 57.0 131 33.6
Sed0025517 Sechium edule HOM05D002758 ORTHO05D002885 1.3e-06 57.0 126 39.7
CAN.G403.8 Capsicum annuum HOM05D002758 ORTHO05D002885 1.6e-06 56.6 137 32.8
Cfa003385 Carpinus fangiana HOM05D002758 ORTHO05D002885 1.6e-06 56.6 144 34.7
CiPaw.03G244800 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.6e-06 56.6 152 33.6
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 1.6e-06 56.6 125 35.2
Haze_25567 Corylus avellana HOM05D002758 ORTHO05D002885 1.6e-06 56.6 158 36.1
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.1e-06 56.2 132 34.8
Glyma.07G031000 Glycine max HOM05D002758 ORTHO05D002885 2.1e-06 56.2 140 36.4
GSVIVG01015544001 Vitis vinifera HOM05D002758 ORTHO05D002885 2.1e-06 56.2 126 46.0
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 2.8e-06 55.8 133 33.8
Manes.14G132900 Manihot esculenta HOM05D002758 ORTHO05D002885 2.8e-06 55.8 133 38.3
SGA_v2.0_scaffold37G14775 Striga asiatica HOM05D002758 ORTHO05D002885 2.8e-06 55.8 149 32.2
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 3.6e-06 55.5 132 34.1
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 3.6e-06 55.5 140 32.1
arahy.Tifrunner.gnm1.ann1.4I3R3X Arachis hypogaea HOM05D002758 ORTHO05D002885 4.8e-06 55.1 142 33.1
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 4.8e-06 55.1 134 38.8
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 4.8e-06 55.1 143 30.8
HanXRQChr04g0096561 Helianthus annuus HOM05D002758 ORTHO05D002885 6.2e-06 54.7 133 34.6
Lalb_Chr10g0096781 Lupinus albus HOM05D002758 ORTHO05D002885 6.2e-06 54.7 129 34.1
TPR.G38648 Trifolium pratense HOM05D002758 ORTHO05D002885 6.2e-06 54.7 140 42.1
TWI32G0299 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 6.2e-06 54.7 120 34.2
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 8.1e-06 54.3 143 33.6
CsaV3_1G030210 Cucumis sativus L. HOM05D002758 ORTHO05D002885 8.1e-06 54.3 127 37.8
DCAR_014886 Daucus carota HOM05D002758 ORTHO05D002885 8.1e-06 54.3 123 35.0
Phvul.010G155100 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 8.1e-06 54.3 132 33.3
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 8.1e-06 54.3 132 33.3
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 8.1e-06 54.3 148 35.8


User provided reference genes

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