Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 6.7e-60 233.8 117 100.0
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.1e-54 216.5 119 93.3
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.5e-51 206.1 117 90.6
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 4.0e-44 181.4 98 92.9
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 5.4e-41 171.0 116 75.0
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 9.2e-33 143.7 115 64.3
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.0e-32 142.5 115 63.5
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 2.9e-31 138.7 115 62.6
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 3.8e-31 138.3 94 70.2
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 6.6e-31 137.5 98 68.4
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 8.6e-31 137.1 97 62.9
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 7.3e-30 134.0 115 60.0
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 9.5e-30 133.7 96 64.6
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 3.6e-29 131.7 92 68.5
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 6.1e-29 131.0 115 57.4
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 8.0e-29 130.6 94 68.1
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 8.0e-29 130.6 88 70.5
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 8.0e-29 130.6 116 56.0
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 1.0e-28 130.2 89 68.5
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 1.0e-28 130.2 103 63.1
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 6.8e-28 127.5 113 55.8
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 6.8e-28 127.5 95 63.2
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 1.5e-27 126.3 111 57.7
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 2.0e-27 125.9 96 64.6
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 2.0e-27 125.9 111 57.7
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 2.0e-27 125.9 89 68.5
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 2.6e-27 125.6 98 63.3
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 5.8e-27 124.4 111 56.8
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 9.8e-27 123.6 94 67.0
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 1.7e-26 122.9 94 59.6
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 1.7e-26 122.9 101 64.4
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 2.9e-26 122.1 88 65.9
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 2.9e-26 122.1 108 54.6
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 6.4e-26 120.9 97 62.9
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 8.3e-26 120.6 106 59.4
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 1.4e-25 119.8 89 67.4
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 1.9e-25 119.4 94 63.8
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 2.4e-25 119.0 95 64.2
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 3.2e-25 118.6 87 63.2
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 3.2e-25 118.6 96 60.4
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 3.2e-25 118.6 101 62.4
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 7.0e-25 117.5 83 67.5
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 9.2e-25 117.1 87 64.4
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 1.2e-24 116.7 107 54.2
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 1.6e-24 116.3 89 65.2
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 1.6e-24 116.3 89 60.7
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 1.6e-24 116.3 97 57.7
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 2.0e-24 115.9 87 62.1
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 2.0e-24 115.9 87 62.1
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 2.0e-24 115.9 94 59.6
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 2.7e-24 115.5 89 60.7
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 4.6e-24 114.8 100 59.0
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 4.6e-24 114.8 92 59.8
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 4.6e-24 114.8 107 57.9
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 6.0e-24 114.4 97 57.7
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 6.0e-24 114.4 103 61.2
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 7.8e-24 114.0 95 60.0
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.3e-23 113.2 90 61.1
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.3e-23 113.2 90 61.1
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.7e-23 112.8 106 59.4
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.7e-23 112.8 105 55.2
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 1.7e-23 112.8 89 62.9
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 2.3e-23 112.5 99 56.6
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 2.3e-23 112.5 90 63.3
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 3.0e-23 112.1 89 61.8
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 5.0e-23 111.3 87 59.8
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 5.0e-23 111.3 100 56.0
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 8.6e-23 110.5 103 59.2
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 1.1e-22 110.2 100 57.0
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 1.5e-22 109.8 90 58.9
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 5.6e-22 107.8 91 63.7
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 7.3e-22 107.5 101 53.5
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 7.3e-22 107.5 90 62.2
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 2.8e-21 105.5 82 64.6
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 4.0e-20 101.7 96 53.1
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 4.4e-19 98.2 89 52.8
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 1.3e-18 96.7 101 49.5
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 1.7e-18 96.3 100 52.0
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 8.3e-18 94.0 88 54.5
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 3.2e-17 92.0 94 50.0
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 2.1e-16 89.4 88 52.3
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 7.8e-16 87.4 79 57.0
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 3.0e-15 85.5 87 52.9
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 6.6e-15 84.3 66 63.6
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 5.6e-14 81.3 92 45.7
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 1.2e-13 80.1 89 48.3
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 1.5e-11 73.2 82 47.6
Hma1.2p1_0586F.1_g183770 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 6.0e-08 61.2 73 50.7
Hma1.2p1_1595F.1_g292725 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 8.6e-07 57.4 53 58.5
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 1.5e-06 56.6 69 44.9


User provided reference genes

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