Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.1e-170 601.7 292 100.0
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 7.1e-159 563.9 292 94.2
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 2.1e-150 535.8 293 90.1
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 1.2e-142 510.0 294 85.7
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.0e-120 437.2 314 74.2
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 9.7e-100 367.5 296 64.5
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 5.3e-98 361.7 304 63.2
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 4.5e-97 358.6 294 62.9
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 7.7e-97 357.8 301 63.1
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 1.1e-95 354.0 286 63.6
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 3.2e-95 352.4 294 62.9
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 9.4e-95 350.9 294 61.6
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 6.1e-94 348.2 295 62.7
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 8.0e-94 347.8 293 62.1
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.8e-93 346.7 294 61.6
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.3e-93 346.3 293 62.1
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.2e-92 344.0 293 61.8
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.0e-92 343.2 289 61.9
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 9.8e-92 340.9 291 61.5
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 1.7e-91 340.1 294 59.9
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.7e-91 340.1 313 58.8
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 8.3e-91 337.8 299 58.2
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.8e-90 336.7 293 60.1
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 2.4e-90 336.3 293 60.1
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 9.1e-90 334.3 284 62.0
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 1.2e-89 334.0 299 59.9
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 6.5e-88 328.2 294 59.5
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 2.5e-87 326.2 291 60.1
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 4.2e-87 325.5 286 59.4
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 5.5e-87 325.1 281 60.1
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 5.5e-87 325.1 297 58.6
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 7.2e-87 324.7 281 60.5
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.6e-86 323.6 285 60.4
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.1e-86 323.2 288 60.8
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 2.7e-86 322.8 285 59.6
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 3.6e-86 322.4 279 59.9
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 3.6e-86 322.4 281 59.4
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 4.7e-86 322.0 291 59.1
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.7e-86 322.0 290 58.3
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 6.1e-86 321.6 279 59.1
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 6.1e-86 321.6 293 59.4
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 6.1e-86 321.6 290 59.7
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 1.8e-85 320.1 294 57.8
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 2.3e-85 319.7 297 59.3
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 3.0e-85 319.3 294 57.5
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 3.0e-85 319.3 300 59.0
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 4.0e-85 318.9 295 56.6
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 1.5e-84 317.0 294 58.2
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 2.0e-84 316.6 286 57.0
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 2.0e-84 316.6 289 58.1
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 4.4e-84 315.5 291 57.0
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 7.5e-84 314.7 294 57.1
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 1.7e-83 313.5 286 57.0
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 2.2e-83 313.2 285 58.9
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 2.8e-83 312.8 279 61.6
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 3.7e-83 312.4 330 55.5
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 4.9e-83 312.0 314 55.7
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 1.4e-82 310.5 300 56.7
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 1.8e-82 310.1 279 59.1
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 3.1e-82 309.3 303 56.4
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 5.4e-82 308.5 292 56.2
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 9.2e-82 307.8 281 58.7
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 1.6e-81 307.0 303 54.5
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 1.6e-81 307.0 287 55.4
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 2.0e-81 306.6 307 55.0
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 3.5e-81 305.8 294 57.1
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.0e-80 304.3 293 55.3
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 2.3e-80 303.1 292 54.8
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 1.5e-79 300.4 290 54.5
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.5e-79 300.4 262 61.1
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.9e-79 300.1 271 60.5
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 4.3e-79 298.9 283 55.1
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 1.2e-78 297.4 294 54.1
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 1.6e-78 297.0 288 56.9
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 4.7e-78 295.4 275 58.9
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 7.5e-76 288.1 293 54.9
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 3.2e-74 282.7 218 63.3
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 1.2e-73 280.8 284 54.9
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 5.9e-73 278.5 267 56.6
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 5.9e-73 278.5 295 49.8
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 1.0e-72 277.7 288 52.1
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 1.3e-72 277.3 287 52.6
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.5e-71 273.9 282 53.5
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.5e-71 273.9 280 53.6
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.2e-65 254.2 298 49.7
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 3.5e-65 252.7 253 54.2
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.7e-64 250.4 281 49.5
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 5.6e-63 245.4 343 42.6
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.2e-62 244.2 175 69.7
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 1.5e-60 237.3 290 46.6
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.1e-58 231.1 279 49.1
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.1e-58 231.1 172 65.7
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 4.1e-58 229.2 172 65.1
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 3.6e-54 216.1 297 44.4
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.1e-53 214.5 276 45.7
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.4e-53 214.2 288 42.0
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 5.2e-53 212.2 277 47.3
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.1e-50 204.5 287 40.8
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 1.9e-50 203.8 150 67.3
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.5e-49 199.5 123 78.9
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.6e-49 199.1 122 77.0
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.8e-49 198.4 156 63.5
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 8.6e-48 194.9 294 40.5
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.2e-44 184.5 283 39.6
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 1.2e-44 184.5 279 41.6
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.2e-44 184.5 298 40.3
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 3.4e-44 183.0 294 41.5
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.2e-43 180.3 290 40.7
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 3.2e-42 176.4 294 40.8
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 3.2e-42 176.4 103 78.6
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 9.3e-42 174.9 268 42.9
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 9.3e-42 174.9 270 40.7
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 1.2e-41 174.5 98 82.7
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.9e-39 167.2 281 40.9
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 4.3e-39 166.0 295 37.6
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.3e-38 164.5 290 39.3
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 9.0e-37 158.3 205 46.3
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 2.6e-36 156.8 96 77.1
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.4e-36 156.4 216 45.8
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.4e-34 150.2 111 62.2
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 4.2e-34 149.4 152 51.3
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 1.2e-33 147.9 183 46.4
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.9e-31 140.6 183 43.2
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 1.8e-29 134.0 120 57.5
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 4.5e-28 129.4 159 49.1
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.8e-28 129.0 197 41.1
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.6e-25 119.4 100 58.0
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.1e-21 108.2 142 43.7
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.8e-21 107.5 142 43.7
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 3.5e-17 93.2 55 76.4
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 4.6e-17 92.8 50 86.0
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 3.0e-16 90.1 202 34.7
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 1.4e-10 71.2 43 79.1
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.2e-10 69.7 103 35.9
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 3.0e-08 63.5 98 41.8
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 2.5e-07 60.5 72 47.2
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 5.7e-07 59.3 70 47.1
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 2.8e-06 57.0 165 32.1


User provided reference genes

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