Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 9.6e-74 280.8 235 100.0
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.0e-58 229.9 237 86.1
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.5e-47 192.6 227 72.2
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 2.1e-36 156.8 226 61.9
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 3.1e-32 142.9 219 52.1
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.6e-31 140.6 223 51.1
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 2.7e-31 139.8 218 62.4
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 2.7e-31 139.8 219 58.9
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 2.7e-31 139.8 236 45.3
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.0e-30 137.9 221 63.3
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.3e-30 137.5 219 38.4
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.7e-30 137.1 219 53.9
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 2.9e-30 136.3 217 68.7
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 5.0e-30 135.6 226 56.2
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 5.0e-30 135.6 219 52.5
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 6.5e-30 135.2 219 48.4
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.1e-29 134.4 219 44.3
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.9e-29 133.7 225 51.6
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.9e-29 133.7 225 51.6
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.9e-29 133.7 222 57.7
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.9e-29 133.7 219 43.8
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.9e-29 133.7 219 54.8
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.9e-29 133.7 157 80.9
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 2.5e-29 133.3 222 39.6
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.2e-29 132.5 216 50.0
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 5.5e-29 132.1 169 49.7
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 7.2e-29 131.7 219 62.6
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 7.2e-29 131.7 219 42.5
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 7.2e-29 131.7 223 58.3
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 7.2e-29 131.7 157 58.6
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 9.5e-29 131.3 225 50.2
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.2e-28 131.0 219 59.4
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.2e-28 131.0 222 47.7
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 2.1e-28 130.2 217 72.4
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.1e-28 130.2 219 48.9
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.1e-28 130.2 224 56.7
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 2.1e-28 130.2 219 53.9
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 4.7e-28 129.0 219 47.9
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 4.7e-28 129.0 157 70.1
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 4.7e-28 129.0 158 52.5
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 6.1e-28 128.6 224 54.5
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 6.1e-28 128.6 158 46.2
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 8.0e-28 128.3 159 67.3
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.0e-27 127.9 227 55.5
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 3.0e-27 126.3 160 55.0
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 3.0e-27 126.3 219 63.9
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 4.0e-27 125.9 219 55.3
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 5.2e-27 125.6 219 54.3
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 5.2e-27 125.6 219 54.3
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 6.8e-27 125.2 220 57.3
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 8.8e-27 124.8 227 59.5
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.2e-26 124.4 221 50.7
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.2e-26 124.4 224 55.4
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.2e-26 124.4 219 37.0
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.5e-26 124.0 162 42.6
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.5e-26 124.0 218 61.9
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.5e-26 124.0 225 47.6
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.6e-26 123.2 225 39.6
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 3.4e-26 122.9 219 58.4
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 5.7e-26 122.1 162 43.2
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 5.7e-26 122.1 225 49.3
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 7.5e-26 121.7 222 41.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 9.8e-26 121.3 155 61.3
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 2.2e-25 120.2 157 59.9
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 2.2e-25 120.2 219 37.0
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 2.8e-25 119.8 219 52.5
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.7e-25 119.4 249 51.4
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 4.9e-25 119.0 220 49.1
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 8.3e-25 118.2 154 47.4
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 8.3e-25 118.2 156 54.5
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.1e-24 117.9 157 54.8
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-24 117.5 162 60.5
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 3.1e-24 116.3 161 60.9
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 3.1e-24 116.3 158 72.8
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.1e-24 115.9 219 46.6
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 4.1e-24 115.9 160 65.0
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 5.4e-24 115.5 154 61.0
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 5.4e-24 115.5 154 63.0
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.0e-24 115.2 158 72.2
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 9.2e-24 114.8 154 63.6
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.6e-23 114.0 220 57.3
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 1.6e-23 114.0 218 42.7
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 2.0e-23 113.6 160 65.6
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-23 113.6 153 63.4
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.0e-23 113.6 156 51.3
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.0e-23 113.6 219 49.3
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 2.7e-23 113.2 153 62.1
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-23 113.2 153 62.1
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 4.5e-23 112.5 220 49.1
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.5e-23 112.5 159 54.7
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 5.9e-23 112.1 220 48.6
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 5.9e-23 112.1 159 53.5
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 5.9e-23 112.1 206 39.8
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 7.7e-23 111.7 160 63.8
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 7.7e-23 111.7 219 54.3
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-22 111.3 154 66.2
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.0e-22 111.3 156 53.8
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.0e-22 111.3 173 59.5
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-22 110.9 154 69.5
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-22 110.9 153 61.4
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-22 110.9 154 64.9
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-22 110.9 154 69.5
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 1.3e-22 110.9 153 61.4
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.3e-22 110.9 220 50.5
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.3e-22 110.9 154 59.7
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.7e-22 110.5 220 50.9
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.9e-22 109.8 156 50.0
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 3.8e-22 109.4 154 55.2
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 3.8e-22 109.4 216 35.6
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 5.0e-22 109.0 161 59.6
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.0e-22 109.0 158 51.9
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 8.6e-22 108.2 158 58.2
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.1e-21 107.8 227 41.0
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.1e-21 107.8 220 42.3
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.5e-21 107.5 166 65.1
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.5e-21 107.5 166 65.1
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.5e-21 107.5 220 39.1
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.9e-21 107.1 161 66.5
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.9e-21 107.1 155 40.0
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 2.5e-21 106.7 242 37.6
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 4.3e-21 105.9 153 40.5
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.6e-21 105.5 206 44.7
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.6e-20 104.0 224 46.0
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 2.1e-20 103.6 157 41.4
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 3.6e-20 102.8 188 57.4
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.3e-19 100.1 156 65.4
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 4.0e-19 99.4 217 55.8
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-18 97.4 154 49.4
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.6e-18 96.7 153 57.5
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 2.6e-18 96.7 236 45.8
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 9.8e-18 94.7 167 50.9
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.2e-17 93.6 221 33.9
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 2.9e-17 93.2 153 57.5
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.9e-17 93.2 216 45.4
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 3.7e-17 92.8 152 38.2
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 3.7e-17 92.8 152 38.2
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.8e-16 90.5 153 56.9
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 4.1e-16 89.4 216 31.5
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 5.4e-16 89.0 218 33.5
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 9.2e-16 88.2 218 40.8
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 3.5e-15 86.3 216 38.0
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 4.6e-15 85.9 156 42.9
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 4.6e-15 85.9 133 45.9
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-14 84.3 152 35.5
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.7e-14 84.0 156 39.1
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 3.0e-14 83.2 154 47.4
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 5.0e-14 82.4 123 60.2
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 6.6e-14 82.0 169 34.3
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 4.3e-13 79.3 154 46.8
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 5.6e-13 79.0 152 35.5
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 5.6e-13 79.0 152 35.5
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 5.6e-13 79.0 152 35.5
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-12 77.0 154 45.5
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.1e-12 77.0 155 34.8
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.8e-11 73.9 164 40.2
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 3.1e-11 73.2 157 49.0
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 3.1e-11 73.2 157 49.0
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-10 70.9 157 49.7
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-10 70.9 157 49.7
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.0e-10 70.5 165 43.0
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 4.4e-10 69.3 154 31.2
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.8e-10 68.9 134 40.3
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.9e-09 66.6 52 50.0
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.4e-09 65.5 236 29.2
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 5.4e-08 62.4 174 35.1
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 7.0e-08 62.0 154 55.2
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-07 60.5 40 65.0
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.0e-07 60.5 154 54.5
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 4.6e-07 59.3 36 75.0
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.6e-07 59.3 154 54.5
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 1.0e-06 58.2 157 46.5


User provided reference genes

Program Settings