Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 5.3e-90 334.3 170 100.0
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 6.5e-80 300.8 163 93.9
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 2.8e-67 258.8 171 78.9
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 1.3e-59 233.4 170 68.8
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 1.8e-58 229.6 172 68.0
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 2.7e-57 225.7 172 67.4
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 3.5e-57 225.3 172 68.0
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 3.5e-57 225.3 173 64.2
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 8.6e-56 220.7 174 63.8
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 4.0e-53 211.8 170 62.4
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 4.4e-52 208.4 171 64.3
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 7.5e-52 207.6 169 62.1
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 1.3e-51 206.8 170 68.8
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 8.3e-51 204.1 183 58.5
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 8.3e-51 204.1 167 61.7
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 8.3e-51 204.1 167 61.7
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 1.4e-50 203.4 167 61.7
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 1.8e-50 203.0 170 61.8
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 4.1e-50 201.8 170 60.6
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 4.6e-49 198.4 174 60.9
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 2.3e-48 196.1 172 57.6
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 1.1e-47 193.7 174 56.9
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 1.5e-47 193.4 171 60.2
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.2e-46 190.3 171 59.6
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.6e-46 189.9 171 60.2
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 3.6e-46 188.7 176 56.8
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 6.2e-46 188.0 171 58.5
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 6.2e-46 188.0 176 56.8
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 8.0e-46 187.6 171 59.6
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 1.0e-45 187.2 172 58.7
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 3.1e-45 185.7 172 58.1
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 4.0e-45 185.3 172 59.3
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 4.0e-45 185.3 172 55.8
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 4.0e-45 185.3 160 58.8
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 2.6e-44 182.6 169 56.8
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 2.6e-44 182.6 173 56.6
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 2.6e-44 182.6 170 56.5
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 3.4e-44 182.2 171 57.3
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 5.8e-44 181.4 174 54.6
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 1.3e-43 180.3 170 55.9
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 3.7e-43 178.7 170 56.5
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 6.4e-43 177.9 173 54.9
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 1.4e-42 176.8 169 56.2
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 9.2e-42 174.1 173 54.3
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 1.2e-41 173.7 168 54.2
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 1.6e-41 173.3 171 53.2
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 2.0e-41 172.9 168 54.8
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 2.0e-41 172.9 168 54.8
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 3.5e-41 172.2 170 55.3
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 4.6e-41 171.8 168 53.6
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 6.0e-41 171.4 166 54.8
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 6.0e-41 171.4 175 52.6
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 1.0e-40 170.6 168 54.2
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 1.0e-40 170.6 173 53.2
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 1.3e-40 170.2 168 54.2
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 1.3e-40 170.2 168 54.2
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 1.3e-40 170.2 168 54.2
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 1.3e-40 170.2 168 54.2
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 1.7e-40 169.9 169 52.1
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 2.3e-40 169.5 178 51.7
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 2.3e-40 169.5 168 55.4
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 8.6e-40 167.5 172 51.2
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 8.6e-40 167.5 170 52.9
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 1.1e-39 167.2 170 52.9
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 1.5e-39 166.8 170 52.9
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 2.5e-39 166.0 170 52.9
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 3.6e-38 162.2 157 55.4
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 6.2e-38 161.4 174 50.6
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 8.1e-38 161.0 171 51.5
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 1.1e-37 160.6 170 49.4
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 1.8e-37 159.8 157 54.8
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 2.3e-37 159.5 170 53.5
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 2.3e-37 159.5 176 51.7
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 5.8e-36 154.8 172 50.6
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 2.2e-35 152.9 170 50.6
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 1.4e-34 150.2 168 47.0
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 2.1e-33 146.4 171 47.4
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 2.1e-33 146.4 162 53.7
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 3.0e-32 142.5 169 49.7
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 6.6e-32 141.4 145 53.1
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 1.1e-31 140.6 168 47.6
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 2.5e-31 139.4 167 46.7
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 4.4e-28 128.6 171 44.4
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 9.9e-28 127.5 167 47.3
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 1.3e-27 127.1 166 44.0
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.7e-27 126.7 167 43.1
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 8.4e-27 124.4 148 45.9
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 1.1e-26 124.0 117 52.1
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 5.4e-26 121.7 168 44.0
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 1.2e-25 120.6 143 47.6
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 1.6e-25 120.2 168 42.3
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.3e-24 116.3 140 47.1
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 3.0e-24 115.9 168 41.7
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 2.2e-19 99.8 130 43.1
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 4.2e-18 95.5 150 38.7
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 3.0e-16 89.4 104 45.2
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 3.3e-15 85.9 134 35.1
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 1.3e-11 73.9 132 34.1
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 1.1e-10 70.9 100 40.0
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 9.3e-10 67.8 137 29.9
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 1.1e-07 60.8 76 44.7
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 1.1e-07 60.8 73 47.9
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 7.4e-07 58.2 179 25.1


User provided reference genes

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