Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017748.2 Cucumis melo HOM05D006978 ORTHO05D008723 2.3e-196 688.7 354 100.0
CsaV3_4G002940 Cucumis sativus L. HOM05D006978 ORTHO05D008723 1.2e-189 666.4 354 92.9
ClCG07G015370 Citrullus lanatus HOM05D006978 ORTHO05D008723 5.9e-176 620.9 353 87.8
Sed0026660 Sechium edule HOM05D006978 ORTHO05D008723 8.9e-140 500.7 352 75.0
QL03p051315 Quercus lobata HOM05D006978 ORTHO05D008723 2.4e-137 492.7 351 67.8
Sabra03G0122900 Salix brachista HOM05D006978 ORTHO05D008723 2.1e-136 489.6 285 77.9
CiPaw.05G106100 Carya illinoinensis HOM05D006978 ORTHO05D008723 6.0e-136 488.0 353 68.6
Hma1.2p1_0065F.1_g034960 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 6.0e-136 488.0 286 77.3
Potri.003G167600 Populus trichocarpa HOM05D006978 ORTHO05D008723 1.7e-135 486.5 285 77.2
Dinv11704 Davidia involucrata HOM05D006978 ORTHO05D008723 3.9e-135 485.3 287 76.3
FvH4_4g23290 Fragaria vesca HOM05D006978 ORTHO05D008723 4.3e-134 481.9 289 75.8
Ciclev10031990m.g Citrus clementina HOM05D006978 ORTHO05D008723 5.6e-134 481.5 349 67.6
GSVIVG01000920001 Vitis vinifera HOM05D006978 ORTHO05D008723 5.6e-134 481.5 291 76.3
PSO017G5946 Papaver somniferum HOM05D006978 ORTHO05D008723 7.3e-134 481.1 328 68.9
FAN07G2913 Fragaria x ananassa HOM05D006978 ORTHO05D008723 9.6e-134 480.7 289 75.1
Cfa009396 Carpinus fangiana HOM05D006978 ORTHO05D008723 1.2e-133 480.3 353 68.0
FAN17G0898 Fragaria x ananassa HOM05D006978 ORTHO05D008723 1.2e-133 480.3 289 75.1
Nn3g16378 Nelumbo nucifera HOM05D006978 ORTHO05D008723 2.1e-133 479.6 288 75.7
TAR371G0953 Trochodendron aralioides HOM05D006978 ORTHO05D008723 2.8e-133 479.2 288 76.7
TWI36G1146 Tripterygium wilfordii HOM05D006978 ORTHO05D008723 3.6e-133 478.8 285 75.8
CSS0048975 Camellia sinensis var. sinensis HOM05D006978 ORTHO05D008723 4.7e-133 478.4 286 74.8
RcHm_v2.0_Chr4g0429651 Rosa chinensis HOM05D006978 ORTHO05D008723 4.7e-133 478.4 285 76.8
Lj3A1073G42 Lonicera japonica HOM05D006978 ORTHO05D008723 6.2e-133 478.0 286 75.5
FAN12G0972 Fragaria x ananassa HOM05D006978 ORTHO05D008723 2.4e-132 476.1 289 75.1
Actinidia09621 Actinidia chinensis HOM05D006978 ORTHO05D008723 2.6e-131 472.6 286 74.1
PSO478G2402 Papaver somniferum HOM05D006978 ORTHO05D008723 3.4e-131 472.2 328 68.3
Thecc.02G200200 Theobroma cacao HOM05D006978 ORTHO05D008723 5.8e-131 471.5 315 68.9
PGR102G2599 Punica granatum HOM05D006978 ORTHO05D008723 1.7e-130 469.9 284 76.1
AUR62028894 Chenopodium quinoa HOM05D006978 ORTHO05D008723 2.9e-130 469.2 288 73.6
Duzib248G1034 Durio zibethinus HOM05D006978 ORTHO05D008723 2.9e-130 469.2 285 74.0
Gorai.005G194100 Gossypium raimondii HOM05D006978 ORTHO05D008723 1.1e-129 467.2 285 74.4
Lj1g0015384 Lotus japonicus HOM05D006978 ORTHO05D008723 1.1e-129 467.2 285 76.8
EL10Ac6g13545 Beta vulgaris HOM05D006978 ORTHO05D008723 1.4e-129 466.8 291 72.2
Ca_07142_v3 Cicer arietinum L. HOM05D006978 ORTHO05D008723 1.4e-129 466.8 326 68.1
Gohir.A03G149500 Gossypium hirsutum HOM05D006978 ORTHO05D008723 1.4e-129 466.8 285 74.4
HanXRQChr08g0210001 Helianthus annuus HOM05D006978 ORTHO05D008723 1.4e-129 466.8 332 65.4
Psat3g186920 Pisum sativum HOM05D006978 ORTHO05D008723 1.4e-129 466.8 330 67.6
TPR.G2900 Trifolium pratense HOM05D006978 ORTHO05D008723 9.3e-129 464.2 290 74.1
Gohir.D02G172400 Gossypium hirsutum HOM05D006978 ORTHO05D008723 1.2e-128 463.8 285 74.0
AUR62005659 Chenopodium quinoa HOM05D006978 ORTHO05D008723 2.1e-128 463.0 288 72.6
Thhalv10016892m.g Eutrema salsugineum HOM05D006978 ORTHO05D008723 2.1e-128 463.0 335 67.5
Solyc01g009970.3 Solanum lycopersicum HOM05D006978 ORTHO05D008723 2.1e-128 463.0 286 73.1
Migut.K01011 Erythranthe guttata HOM05D006978 ORTHO05D008723 2.7e-128 462.6 288 72.6
CAN.G373.1 Capsicum annuum HOM05D006978 ORTHO05D008723 3.5e-128 462.2 284 72.2
Prupe.1G221700 Prunus persica HOM05D006978 ORTHO05D008723 4.6e-128 461.8 285 73.7
PGSC0003DMG400005222 Solanum tuberosum HOM05D006978 ORTHO05D008723 7.8e-128 461.1 286 72.7
Cc11_g17300 Coffea canephora HOM05D006978 ORTHO05D008723 1.0e-127 460.7 283 72.8
Medtr7g022480 Medicago truncatula HOM05D006978 ORTHO05D008723 1.0e-127 460.7 286 74.5
CANSAT01G1132 Cannabis sativa HOM05D006978 ORTHO05D008723 1.3e-127 460.3 284 74.3
Sopen01g005540 Solanum pennellii HOM05D006978 ORTHO05D008723 1.7e-127 459.9 284 72.5
BcaC02g11649 Brassica carinata HOM05D006978 ORTHO05D008723 3.0e-127 459.1 335 66.9
CARHR129600 Cardamine hirsuta HOM05D006978 ORTHO05D008723 3.0e-127 459.1 288 74.0
VMungo1383G2882 Vigna mungo HOM05D000485 ORTHO05D000341 3.9e-127 458.8 286 74.5
ECA233G0335 Erigeron canadensis HOM05D006978 ORTHO05D008723 8.7e-127 457.6 284 73.2
Sp4g17670 Schrenkiella parvula HOM05D006978 ORTHO05D008723 1.1e-126 457.2 335 67.2
Carub.0004s1713 Capsella rubella HOM05D006978 ORTHO05D008723 1.5e-126 456.8 333 67.0
Nitab4.5_0001771g0130 Nicotiana tabacum HOM05D006978 ORTHO05D008723 1.9e-126 456.4 283 73.1
AL4G31500 Arabidopsis lyrata HOM05D006978 ORTHO05D008723 3.3e-126 455.7 333 65.5
AT2G35450 Arabidopsis thaliana HOM05D006978 ORTHO05D008723 5.6e-126 454.9 336 66.1
Aqoxy5G03257 Aquilegia oxysepala HOM05D006978 ORTHO05D008723 7.3e-126 454.5 288 71.2
BcaB02g09429 Brassica carinata HOM05D006978 ORTHO05D008723 7.3e-126 454.5 355 63.9
Nitab4.5_0004878g0040 Nicotiana tabacum HOM05D006978 ORTHO05D008723 1.3e-125 453.8 287 71.8
BolC4t22921H Brassica oleracea HOM05D006978 ORTHO05D008723 1.6e-125 453.4 336 66.4
C04p12730 Brassica napus HOM05D006978 ORTHO05D008723 2.1e-125 453.0 336 66.4
DCAR_031207 Daucus carota HOM05D006978 ORTHO05D008723 2.1e-125 453.0 288 69.8
Oeu011352.1 Olea europaea HOM05D006978 ORTHO05D008723 1.4e-124 450.3 284 72.2
A05p10300 Brassica napus HOM05D006978 ORTHO05D008723 1.8e-124 449.9 352 63.9
Eucgr.B03530 Eucalyptus grandis HOM05D006978 ORTHO05D008723 4.0e-124 448.7 285 73.7
BraA05t19968Z Brassica rapa HOM05D006978 ORTHO05D008723 5.3e-124 448.4 354 64.4
MD16G1123900 Malus domestica HOM05D006978 ORTHO05D008723 5.3e-124 448.4 355 63.1
Lalb_Chr10g0092011 Lupinus albus HOM05D006978 ORTHO05D008723 1.2e-123 447.2 285 73.7
Aa31LG9G13360 Aethionema arabicum HOM05D006978 ORTHO05D008723 7.6e-123 444.5 304 68.1
arahy.Tifrunner.gnm1.ann1.2517Z7 Arachis hypogaea HOM05D006978 ORTHO05D008723 3.8e-122 442.2 355 62.5
arahy.Tifrunner.gnm1.ann1.HCE1UU Arachis hypogaea HOM05D006978 ORTHO05D008723 3.8e-122 442.2 355 62.5
THA.LOC104814198 Tarenaya hassleriana HOM05D006978 ORTHO05D008723 6.4e-122 441.4 283 70.3
Atru.BG.287.p Acer truncatum HOM05D006978 ORTHO05D008723 3.2e-121 439.1 271 73.8
Os04g0391900 Oryza sativa ssp. japonica HOM05D006978 ORTHO05D008723 7.1e-121 438.0 287 67.6
Glyma.18G285000 Glycine max HOM05D006978 ORTHO05D008723 1.8e-119 433.3 287 67.9
SalBow2G2397 Salvia bowleyana HOM05D006978 ORTHO05D008723 1.8e-116 423.3 307 65.5
Sc11g0000330 Simmondsia chinensis HOM05D006978 ORTHO05D008723 9.0e-116 421.0 280 68.9
vmacro16091 Vaccinium macrocarpon HOM05D006978 ORTHO05D008723 1.2e-115 420.6 310 64.8
SEGI_15057 Sequoiadendron giganteum HOM05D006978 ORTHO05D008723 5.8e-115 418.3 291 65.6
Hund06110 Selenicereus undatus HOM05D006978 ORTHO05D008723 1.7e-114 416.8 290 69.3
Haze_12456 Corylus avellana HOM05D006978 ORTHO05D008723 2.3e-111 406.4 300 67.3
Glyma.18G284800 Glycine max HOM05D006978 ORTHO05D008723 2.8e-109 399.4 250 73.2
Phvul.008G016700 Phaseolus vulgaris HOM05D006978 ORTHO05D008723 1.5e-107 393.7 244 73.8
Mapoly0133s0049 Marchantia polymorpha HOM05D006978 ORTHO05D008723 2.6e-107 392.9 286 60.8
Atru.chr11.2376 Acer truncatum HOM05D006978 ORTHO05D008723 3.4e-107 392.5 245 72.7
Peaxi162Scf00255g00025 Petunia axillaris HOM05D006978 ORTHO05D008723 7.6e-107 391.3 248 71.0
Pp3c1_20610 Physcomitrium patens HOM05D006978 ORTHO05D008723 7.6e-107 391.3 286 61.9
SMO118G0021 Selaginella moellendorffii HOM05D006978 ORTHO05D008723 6.0e-104 381.7 290 59.7
ATR0582G006 Amborella trichopoda HOM05D006978 ORTHO05D008723 5.7e-102 375.2 248 68.1
Ah.02g130990 Amaranthus hybridus HOM05D006978 ORTHO05D008723 8.5e-98 361.3 291 61.2
CDE06G2364 Ceratophyllum demersum HOM05D006978 ORTHO05D008723 1.1e-97 360.9 346 55.2
AagrBONN_evm.TU.Sc2ySwM_117.2371 Anthoceros agrestis HOM05D006978 ORTHO05D008723 7.2e-97 358.2 282 58.9
Manes.13G007900 Manihot esculenta HOM05D006978 ORTHO05D008723 5.3e-92 342.0 199 77.4
Zm00001eb421220 Zea mays HOM05D006978 ORTHO05D008723 1.6e-80 303.9 195 69.2
MCO09G507 Micromonas commoda HOM05D006978 ORTHO05D008723 9.4e-73 278.1 293 47.8
MSTRG.476 Avicennia marina HOM05D006978 ORTHO05D008723 1.5e-65 254.2 143 78.3
Cpa.g.sc99.56 Carica papaya HOM05D006978 ORTHO05D008723 2.0e-54 217.2 144 68.1
MBI11_g38268_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 8.0e-48 195.3 110 74.5
Glyma.02G096500 Glycine max HOM05D006978 ORTHO05D008723 1.8e-47 194.1 114 71.9
Hma1.2p1_0065F.1_g034970 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 3.7e-45 186.4 99 84.8
PRCOL_00001136 Prasinoderma coloniale HOM05D006978 ORTHO05D008723 1.6e-43 181.0 286 38.1
SalBow2G1646 Salvia bowleyana HOM05D006978 ORTHO05D008723 3.0e-42 176.8 105 77.1
MBI11_g38269_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 4.7e-32 142.9 111 57.7
Actinidia34017 Actinidia chinensis HOM05D006978 ORTHO05D008723 8.3e-29 132.1 156 44.2
arahy.Tifrunner.gnm1.ann1.5L80US Arachis hypogaea HOM05D006978 ORTHO05D008723 5.4e-28 129.4 87 73.6
Rhsim12G0096200 Rhododendron simsii HOM05D006978 ORTHO05D008723 1.6e-27 127.9 99 60.6
Cpa.g.sc99.55 Carica papaya HOM05D006978 ORTHO05D008723 5.4e-20 102.8 126 47.6
Peaxi162Scf00255g00026 Petunia axillaris HOM05D006978 ORTHO05D008723 7.6e-14 82.4 43 81.4
arahy.Tifrunner.gnm1.ann1.0RBU3Z Arachis hypogaea HOM05D006978 ORTHO05D008723 9.3e-12 75.5 55 56.4
RcHm_v2.0_Chr2g0135531 Rosa chinensis HOM05D006978 ORTHO05D008723 2.3e-10 70.9 39 76.9
MBI11_g31937_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 1.3e-08 65.1 42 64.3
MBI11_g31938_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 1.6e-08 64.7 49 57.1


User provided reference genes

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