Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 1.1e-206 723.0 358 100.0
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 1.6e-200 702.6 360 96.9
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 2.5e-182 642.1 360 89.4
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 8.4e-178 627.1 328 95.4
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 1.1e-161 573.5 329 88.1
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 5.6e-158 561.2 363 76.9
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 9.6e-158 560.5 358 77.7
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 1.2e-155 553.5 361 78.1
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 1.7e-154 549.7 361 75.9
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 2.4e-153 545.8 364 77.2
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 9.3e-153 543.9 358 76.0
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 9.3e-153 543.9 359 75.8
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 1.2e-152 543.5 358 75.7
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 2.1e-152 542.7 357 75.1
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 2.7e-152 542.3 361 77.3
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 1.3e-151 540.0 357 74.8
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 2.3e-151 539.3 363 74.4
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 2.3e-151 539.3 365 76.2
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 2.3e-151 539.3 365 76.2
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 3.0e-151 538.9 361 76.7
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 8.7e-151 537.3 357 74.8
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 1.5e-150 536.6 366 75.4
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 2.5e-150 535.8 366 75.4
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 3.3e-150 535.4 361 76.2
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 9.6e-150 533.9 374 74.3
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 9.6e-150 533.9 374 74.3
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 2.8e-149 532.3 359 74.7
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.1e-148 530.4 361 74.8
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.1e-148 530.4 361 74.8
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 1.1e-148 530.4 359 74.1
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 1.1e-148 530.4 362 75.1
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 6.9e-148 527.7 363 75.8
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.5e-147 526.6 359 74.9
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 3.4e-147 525.4 376 72.9
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 4.5e-147 525.0 361 76.2
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 1.3e-146 523.5 364 74.5
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 6.5e-146 521.2 366 72.1
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.1e-145 520.4 360 75.6
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 1.4e-145 520.0 368 71.5
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 2.5e-145 519.2 369 71.3
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 3.2e-145 518.8 360 72.5
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 9.3e-145 517.3 369 71.3
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 9.3e-145 517.3 360 72.8
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 9.3e-145 517.3 358 72.9
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 9.3e-145 517.3 368 71.7
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 1.6e-144 516.5 369 72.1
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 4.6e-144 515.0 362 73.5
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 6.0e-144 514.6 369 69.9
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 1.3e-143 513.5 369 71.0
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 2.3e-143 512.7 367 72.2
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 3.0e-143 512.3 368 71.5
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 3.9e-143 511.9 358 71.5
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 3.9e-143 511.9 358 72.1
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 5.1e-143 511.5 361 71.7
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 8.7e-143 510.8 369 71.0
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 2.5e-142 509.2 361 71.2
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 2.5e-142 509.2 360 71.7
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 4.3e-142 508.4 369 70.5
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 9.7e-142 507.3 363 73.3
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 1.6e-141 506.5 359 72.4
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 3.7e-141 505.4 367 69.5
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 3.7e-141 505.4 367 69.5
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 6.3e-141 504.6 365 72.6
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 1.1e-140 503.8 343 74.9
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.9e-138 495.7 359 69.9
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 6.5e-138 494.6 366 69.4
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 8.5e-138 494.2 364 69.2
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.9e-137 493.0 358 71.5
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 2.5e-137 492.7 359 71.0
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 3.2e-137 492.3 362 69.1
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 5.5e-137 491.5 358 68.2
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 5.5e-137 491.5 368 68.5
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 6.1e-136 488.0 360 68.3
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 3.0e-135 485.7 364 67.6
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 3.9e-135 485.3 442 61.5
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 5.1e-135 485.0 363 68.9
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 1.5e-134 483.4 359 68.8
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 1.3e-133 480.3 358 67.9
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 1.7e-133 479.9 363 68.0
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 8.2e-133 477.6 362 67.1
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 8.2e-133 477.6 363 67.8
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 1.1e-132 477.2 363 67.5
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 1.4e-132 476.9 361 67.3
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 5.3e-132 474.9 318 74.2
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 5.3e-132 474.9 380 65.8
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 9.1e-132 474.2 358 67.0
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 1.5e-131 473.4 355 67.6
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 2.6e-131 472.6 368 66.3
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 3.4e-131 472.2 356 66.9
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 1.4e-129 466.8 330 72.4
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.9e-129 466.5 361 66.2
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 7.9e-128 461.1 364 65.9
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 3.0e-127 459.1 358 65.6
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 2.0e-126 456.4 361 65.9
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 3.3e-126 455.7 359 65.7
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 4.4e-126 455.3 329 72.6
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.2e-123 447.2 358 64.0
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 3.4e-123 445.7 364 62.1
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.4e-121 440.3 369 63.4
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 1.8e-119 433.3 371 63.1
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 2.3e-119 433.0 334 66.5
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 2.3e-119 433.0 370 62.7
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 3.9e-119 432.2 358 62.3
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 1.0e-114 417.5 289 74.7
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 2.9e-114 416.0 292 75.3
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 3.8e-114 415.6 295 74.2
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 1.9e-113 413.3 365 58.6
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 2.7e-112 409.5 305 64.9
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 1.4e-111 407.1 362 59.4
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 4.8e-109 398.7 360 58.3
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 2.2e-106 389.8 304 62.5
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 3.8e-106 389.0 366 59.3
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 3.8e-106 389.0 349 57.0
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 1.0e-103 380.9 336 60.7
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 7.0e-100 368.2 194 89.7
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 1.0e-98 364.4 311 60.1
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 5.5e-97 358.6 366 54.1
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 2.1e-96 356.7 228 77.2
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 1.4e-95 354.0 309 56.6
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 5.2e-95 352.1 194 84.5
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.2e-94 350.9 303 57.1
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 5.7e-94 348.6 306 56.9
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 2.8e-93 346.3 338 55.3
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 8.3e-93 344.7 194 83.5
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 5.4e-92 342.0 304 54.3
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 1.6e-67 260.8 153 80.4
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 9.2e-60 235.0 126 87.3
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 3.5e-59 233.0 210 58.6
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 2.8e-48 196.8 212 49.1
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 2.6e-46 190.3 100 88.0
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 9.3e-44 181.8 93 88.2
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 1.6e-43 181.0 191 52.9
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 4.8e-40 169.5 145 65.5
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 5.1e-34 149.4 233 45.1
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 5.8e-30 136.0 150 50.7
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 2.9e-29 133.7 101 69.3
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 8.4e-29 132.1 166 48.8
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 1.6e-27 127.9 73 79.5
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 2.7e-27 127.1 73 79.5
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 2.7e-27 127.1 88 71.6
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 4.8e-16 89.7 126 41.3
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 8.5e-13 79.0 42 83.3
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 9.1e-07 58.9 72 52.8


User provided reference genes

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