Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 9.3e-262 906.4 469 100.0
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 6.3e-250 867.1 469 94.9
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 1.8e-228 795.8 466 89.9
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 3.8e-186 655.2 468 76.3
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 4.7e-104 382.5 446 51.3
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 6.3e-101 372.1 397 53.1
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 3.5e-99 366.3 466 48.1
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 1.0e-98 364.8 400 52.2
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 1.9e-97 360.5 393 53.4
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 9.5e-97 358.2 406 50.2
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 8.0e-96 355.1 454 48.0
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 4.4e-94 349.4 426 49.8
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 5.8e-94 349.0 432 48.1
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 1.2e-91 341.3 448 47.3
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 7.8e-91 338.6 461 44.3
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 1.0e-90 338.2 450 46.2
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 3.0e-90 336.7 440 48.6
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 3.9e-90 336.3 430 47.9
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 3.9e-90 336.3 430 47.9
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 5.0e-90 335.9 406 49.0
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 5.0e-90 335.9 465 44.5
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 1.1e-89 334.7 429 47.3
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 1.5e-89 334.3 460 44.6
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 4.3e-89 332.8 444 48.4
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 4.7e-88 329.3 440 47.0
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 6.2e-88 328.9 433 47.8
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 2.3e-87 327.0 453 47.2
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 5.2e-87 325.9 457 44.9
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 4.4e-86 322.8 391 50.4
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 5.8e-86 322.4 395 49.4
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 3.7e-85 319.7 448 44.9
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 8.3e-85 318.5 453 45.7
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 8.3e-85 318.5 426 45.5
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 1.4e-84 317.8 349 52.7
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 1.9e-84 317.4 450 44.0
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 2.4e-84 317.0 453 45.5
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 4.1e-84 316.2 466 43.1
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 5.4e-84 315.8 432 46.1
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 7.1e-84 315.5 445 45.6
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 9.2e-84 315.1 429 46.4
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 1.2e-83 314.7 476 41.6
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 1.2e-83 314.7 444 45.5
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 1.6e-83 314.3 445 45.6
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 1.6e-83 314.3 462 43.9
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 4.6e-83 312.8 340 53.2
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 6.0e-83 312.4 413 46.0
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 1.0e-82 311.6 445 45.2
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 1.0e-82 311.6 431 45.0
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 1.3e-82 311.2 441 45.6
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 3.9e-82 309.7 444 45.7
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 8.6e-82 308.5 394 47.2
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 1.9e-81 307.4 396 46.5
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 4.3e-81 306.2 443 44.5
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 4.3e-81 306.2 421 44.7
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 9.5e-81 305.1 380 45.0
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 1.2e-80 304.7 399 46.6
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 1.2e-80 304.7 435 43.0
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 2.8e-80 303.5 456 41.7
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 2.8e-80 303.5 456 41.7
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 6.2e-80 302.4 438 44.7
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 8.1e-80 302.0 452 43.8
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 1.4e-79 301.2 443 44.0
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 3.1e-79 300.1 439 43.7
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 3.1e-79 300.1 453 41.3
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 7.6e-78 295.4 421 44.4
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 1.3e-77 294.7 458 40.4
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 4.1e-76 289.7 452 40.9
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 5.4e-76 289.3 464 40.9
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 5.4e-76 289.3 439 43.7
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 3.5e-75 286.6 422 44.5
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 1.3e-74 284.6 454 42.3
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 1.7e-74 284.3 496 39.5
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 8.6e-74 282.0 392 46.4
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 7.3e-73 278.9 396 42.7
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 1.6e-72 277.7 449 40.1
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 4.7e-72 276.2 414 41.3
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 4.7e-72 276.2 315 49.8
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 1.8e-71 274.2 477 39.6
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 1.5e-70 271.2 220 62.3
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 1.7e-69 267.7 398 43.2
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 7.8e-67 258.8 384 41.7
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 3.3e-65 253.4 459 38.8
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 1.5e-62 244.6 365 40.8
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 1.0e-58 231.9 387 39.5
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 3.0e-58 230.3 398 39.2
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 3.9e-58 229.9 444 40.1
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 6.6e-58 229.2 440 40.2
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 7.3e-57 225.7 312 49.0
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 2.8e-56 223.8 363 40.8
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 5.3e-55 219.5 465 35.7
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 6.9e-55 219.2 359 39.0
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 1.4e-52 211.5 457 35.2
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 1.6e-51 208.0 517 32.5
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 7.4e-49 199.1 161 63.4
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.1e-48 197.6 161 62.7
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 4.0e-47 193.4 168 60.1
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 4.0e-47 193.4 456 33.6
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 4.5e-46 189.9 359 32.9
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 3.8e-45 186.8 317 40.1
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 5.0e-37 159.8 120 68.3
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 1.0e-34 152.1 358 32.1
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.9e-33 147.9 434 27.2
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 9.4e-28 129.0 227 38.8
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 9.4e-28 129.0 226 38.9
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 3.0e-26 124.0 283 34.3
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 7.4e-25 119.4 284 30.6
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 1.4e-23 115.2 244 35.2
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 1.3e-21 108.6 315 30.8
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 2.5e-20 104.4 287 31.7
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 1.4e-18 98.6 86 60.5
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 2.3e-18 97.8 73 61.6
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 2.8e-16 90.9 83 63.9
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 5.3e-15 86.7 78 56.4
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 3.5e-14 84.0 298 28.5
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 2.7e-11 74.3 78 51.3
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 6.7e-10 69.7 90 47.8
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.1e-09 68.9 74 51.4
Glyma.10G295900 Glycine max HOM05D006262 ORTHO05D007266 4.4e-09 67.0 155 38.1
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.3e-08 65.5 46 69.6
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 1.7e-08 65.1 49 65.3
BraA10t42873Z Brassica rapa HOM05D006262 ORTHO05D007266 2.4e-07 61.2 176 29.5
FAN07G1916 Fragaria x ananassa HOM05D006262 ORTHO05D007266 7.0e-07 59.7 43 62.8


User provided reference genes

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