Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 6.4e-155 550.8 301 100.0
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 5.1e-128 461.5 301 80.1
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 3.1e-109 399.1 303 78.2
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 2.8e-94 349.4 257 72.0
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 2.3e-75 286.6 240 60.4
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 1.6e-73 280.4 266 56.4
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 1.6e-73 280.4 229 63.3
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 3.6e-73 279.3 262 57.3
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 4.7e-73 278.9 231 61.0
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 6.1e-73 278.5 242 59.5
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 8.0e-73 278.1 254 57.5
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 1.4e-72 277.3 229 64.6
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 1.8e-72 276.9 255 58.8
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 6.8e-72 275.0 261 57.1
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 2.6e-71 273.1 245 58.8
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 4.4e-71 272.3 231 60.2
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 5.7e-71 271.9 249 59.0
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 7.5e-71 271.6 240 57.9
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.3e-70 270.8 240 57.9
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 1.3e-70 270.8 238 60.1
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 3.7e-70 269.2 241 57.7
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 1.1e-69 267.7 236 57.6
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 2.4e-69 266.5 240 56.7
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 5.4e-69 265.4 242 56.2
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 5.4e-69 265.4 236 57.2
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 7.0e-69 265.0 261 55.6
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 7.0e-69 265.0 252 57.5
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 3.5e-68 262.7 243 56.8
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 4.5e-68 262.3 236 56.8
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.0e-67 261.2 252 54.0
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 1.7e-67 260.4 259 52.9
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.9e-67 259.6 261 54.8
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 3.8e-67 259.2 250 54.8
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 5.0e-67 258.8 271 53.1
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 5.0e-67 258.8 257 54.5
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 6.6e-67 258.5 246 53.3
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 1.9e-66 256.9 261 54.0
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 1.9e-66 256.9 251 52.6
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 2.5e-66 256.5 256 53.5
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 5.6e-66 255.4 239 53.1
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 5.6e-66 255.4 257 52.5
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.6e-66 255.4 275 52.7
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.6e-66 255.4 243 58.4
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 7.3e-66 255.0 261 53.6
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 7.3e-66 255.0 242 55.8
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 7.3e-66 255.0 251 53.0
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 9.5e-66 254.6 229 58.1
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 1.2e-65 254.2 254 53.1
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 1.6e-65 253.8 239 54.4
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 2.1e-65 253.4 234 55.6
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 2.1e-65 253.4 251 53.0
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 2.8e-65 253.1 262 51.1
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 4.7e-65 252.3 241 54.4
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 4.7e-65 252.3 241 54.4
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 6.1e-65 251.9 244 54.5
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 6.1e-65 251.9 239 54.0
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 8.0e-65 251.5 241 53.9
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 1.0e-64 251.1 241 54.8
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 1.0e-64 251.1 264 50.0
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 2.3e-64 250.0 250 52.4
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 4.0e-64 249.2 236 56.8
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 5.2e-64 248.8 241 54.8
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 6.8e-64 248.4 241 53.9
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 1.2e-63 247.7 244 51.6
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 1.5e-63 247.3 243 54.7
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 2.6e-63 246.5 231 53.2
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 2.9e-62 243.0 257 49.4
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.1e-61 241.1 253 50.2
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 1.9e-61 240.4 274 51.5
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 2.0e-60 236.9 238 51.3
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 3.5e-60 236.1 232 54.7
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 4.6e-60 235.7 238 51.3
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 4.6e-60 235.7 243 51.4
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 7.8e-60 235.0 242 52.1
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 1.0e-59 234.6 237 50.2
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 1.7e-59 233.8 240 54.6
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 2.3e-59 233.4 241 51.5
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 3.0e-59 233.0 241 51.9
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 1.1e-58 231.1 234 48.7
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 1.2e-57 227.6 214 54.2
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 4.7e-57 225.7 201 60.2
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 3.1e-56 223.0 211 53.6
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 4.0e-56 222.6 262 48.9
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 5.2e-56 222.2 216 55.6
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 5.2e-56 222.2 221 52.9
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 1.2e-55 221.1 236 49.6
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 1.2e-55 221.1 227 51.5
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 1.2e-52 211.1 204 56.9
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 1.6e-52 210.7 236 46.2
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 1.0e-51 208.0 211 52.6
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 2.3e-51 206.8 198 54.0
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 1.1e-50 204.5 198 55.1
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 1.1e-50 204.5 240 48.3
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.8e-49 199.9 241 46.1
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 1.8e-48 197.2 200 53.0
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 3.2e-45 186.4 205 51.2
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 4.6e-44 182.6 228 43.9
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 1.1e-40 171.4 202 45.5
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.4e-40 171.0 231 41.6
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 7.6e-39 165.2 199 45.7
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.4e-37 160.2 165 53.9
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 5.4e-37 159.1 117 65.0
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 7.1e-37 158.7 250 43.2
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 1.6e-36 157.5 117 63.2
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.7e-35 154.1 254 41.7
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 1.9e-34 150.6 84 84.5
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 4.3e-34 149.4 84 84.5
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 1.2e-33 147.9 229 36.7
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 2.4e-32 143.7 93 71.0
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 2.9e-30 136.7 94 72.3
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 3.8e-30 136.3 222 36.5
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 3.8e-30 136.3 226 34.5
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 4.9e-30 136.0 250 34.0
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.6e-28 131.0 133 51.9
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 2.3e-27 127.1 95 64.2
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 3.0e-27 126.7 196 35.7
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 1.5e-26 124.4 113 56.6
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 6.9e-24 115.5 125 48.0
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 1.5e-23 114.4 95 58.9
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 7.6e-23 112.1 250 30.0
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.8e-17 93.6 185 36.8
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.6e-15 87.0 60 63.3
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 1.1e-10 71.6 99 42.4
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 8.2e-09 65.5 59 50.8


User provided reference genes

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