Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 4.6e-161 571.2 304 100.0
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.2e-123 446.0 304 80.9
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 1.6e-97 360.1 306 69.3
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 1.0e-67 261.2 203 77.3
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 3.9e-51 206.1 309 46.9
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.5e-50 204.1 293 47.8
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.5e-50 204.1 293 47.8
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 1.9e-50 203.8 315 47.3
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 9.6e-50 201.4 278 49.6
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 2.1e-49 200.3 312 47.4
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.1e-48 198.0 319 47.3
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.5e-47 194.1 294 48.0
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 2.6e-47 193.4 313 45.7
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 7.6e-47 191.8 228 54.4
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.0e-46 191.4 310 45.5
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.0e-46 191.4 221 56.1
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.3e-46 191.0 295 46.1
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 6.5e-46 188.7 223 50.2
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 8.4e-46 188.3 289 46.0
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.2e-45 186.0 120 90.8
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 4.2e-45 186.0 303 45.5
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 1.6e-44 184.1 296 44.9
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.1e-44 183.7 223 50.2
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 2.1e-44 183.7 223 49.8
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 2.7e-44 183.3 301 44.9
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 4.6e-44 182.6 303 44.9
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.0e-43 181.4 297 45.5
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.3e-43 181.0 236 50.0
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.8e-43 180.6 309 43.0
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.3e-43 180.3 239 51.5
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.9e-43 179.5 228 50.4
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 6.7e-43 178.7 205 52.2
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 8.7e-43 178.3 306 42.5
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.9e-42 177.2 297 44.1
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 2.5e-42 176.8 219 51.1
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 3.3e-42 176.4 292 44.5
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 3.3e-42 176.4 282 46.1
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.3e-42 176.0 219 51.1
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 4.3e-42 176.0 238 50.8
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 9.6e-42 174.9 208 52.9
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 1.6e-41 174.1 299 43.8
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.6e-41 174.1 313 42.8
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 2.8e-41 173.3 289 44.3
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.8e-41 173.3 287 45.6
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 3.7e-41 172.9 290 44.8
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 4.8e-41 172.6 308 41.2
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.1e-40 171.4 304 44.1
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.4e-40 171.0 232 49.1
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 1.4e-40 171.0 298 43.0
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 1.8e-40 170.6 295 43.4
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.8e-40 170.6 302 42.4
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 5.3e-40 169.1 246 48.8
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 5.3e-40 169.1 274 44.2
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 6.9e-40 168.7 228 49.1
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 9.0e-40 168.3 215 51.2
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.2e-39 167.9 307 43.0
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 1.5e-39 167.5 238 46.2
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 1.5e-39 167.5 238 46.2
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.5e-39 167.5 315 42.5
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.5e-39 167.5 189 55.6
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.5e-39 167.5 240 46.7
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.0e-39 167.2 220 49.5
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.6e-39 166.8 169 59.2
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 3.4e-39 166.4 230 50.4
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 7.6e-39 165.2 232 46.1
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.0e-38 164.9 194 53.1
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 1.3e-38 164.5 299 44.5
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.3e-38 164.5 161 60.9
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.3e-38 164.5 268 46.6
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 2.9e-38 163.3 224 47.8
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 2.9e-38 163.3 225 51.1
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 5.0e-38 162.5 293 41.0
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 5.0e-38 162.5 201 52.2
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 5.0e-38 162.5 249 47.8
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 8.4e-38 161.8 227 49.8
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 1.4e-37 161.0 281 44.1
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.4e-37 161.0 281 41.6
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.4e-37 161.0 286 42.3
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.4e-37 161.0 221 50.7
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.4e-37 161.0 295 43.4
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 1.4e-37 161.0 235 47.2
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.9e-37 160.6 227 49.3
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 3.2e-37 159.8 216 49.5
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 4.2e-37 159.5 293 40.3
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 5.5e-37 159.1 242 45.5
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 7.2e-37 158.7 206 52.4
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 9.3e-37 158.3 293 39.9
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 9.3e-37 158.3 267 43.8
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.2e-36 157.9 309 41.4
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 1.2e-36 157.9 285 41.1
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 1.2e-36 157.9 220 49.1
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.2e-36 157.9 216 49.1
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 4.6e-36 156.0 171 54.4
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 4.6e-36 156.0 157 58.0
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 4.6e-36 156.0 240 46.7
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 4.6e-36 156.0 207 52.2
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 6.1e-36 155.6 166 58.4
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.0e-35 154.8 222 45.9
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.3e-35 154.5 101 90.1
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 5.1e-35 152.5 206 49.0
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 8.7e-35 151.8 265 43.0
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 8.7e-35 151.8 273 42.9
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.5e-34 150.2 273 43.2
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.3e-34 149.8 273 43.2
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 4.3e-34 149.4 199 48.7
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 1.6e-33 147.5 234 49.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 6.3e-33 145.6 316 38.9
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 6.9e-32 142.1 353 35.7
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 1.2e-31 141.4 293 41.0
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.6e-31 140.2 116 78.4
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 3.4e-31 139.8 152 58.6
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 4.5e-31 139.4 251 43.4
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 5.9e-31 139.0 296 40.5
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 7.7e-31 138.7 382 34.3
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 7.7e-31 138.7 267 42.3
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 2.9e-30 136.7 201 48.3
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 5.0e-30 136.0 178 50.0
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.5e-29 133.7 135 60.7
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 9.4e-29 131.7 226 45.1
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.6e-28 131.0 137 57.7
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 2.7e-28 130.2 220 41.4
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 3.6e-28 129.8 127 60.6
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 1.0e-27 128.3 140 57.1
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 1.8e-27 127.5 176 46.0
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 6.7e-27 125.6 123 60.2
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 1.1e-26 124.8 114 64.0
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.5e-26 123.6 239 43.5
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 3.7e-25 119.8 175 46.3
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 8.2e-25 118.6 212 41.5
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 1.8e-24 117.5 142 54.9
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 4.1e-24 116.3 203 43.3
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 9.1e-24 115.2 146 49.3
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.9e-21 107.5 97 63.9
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.9e-19 99.8 102 56.9
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 6.7e-19 99.0 221 39.4
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.6e-18 97.1 219 36.5
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 3.3e-18 96.7 168 42.3
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 8.5e-14 82.0 93 51.6
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 3.2e-13 80.1 222 34.2
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 3.2e-13 80.1 130 39.2
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.0e-11 75.1 75 57.3
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 2.3e-11 73.9 99 44.4
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.0e-11 73.2 61 72.1
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.2e-09 67.4 104 46.2
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 6.3e-09 65.9 82 56.1
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.7e-07 60.5 46 80.4
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 5.0e-06 56.2 125 34.4
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 5.0e-06 56.2 43 76.7


User provided reference genes

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