Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 5.8e-217 757.3 389 100.0
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.2e-198 696.4 399 90.5
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.2e-134 483.8 390 62.6
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.2e-134 483.8 393 61.1
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.6e-134 482.3 395 60.5
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.6e-134 482.3 396 61.9
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.3e-133 479.6 395 61.3
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 3.1e-133 479.2 374 63.4
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.0e-133 478.8 374 63.1
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 4.0e-133 478.8 393 60.6
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 5.2e-133 478.4 374 62.8
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 5.2e-133 478.4 402 60.7
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 6.8e-133 478.0 381 62.5
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 6.8e-133 478.0 393 60.1
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 8.9e-133 477.6 373 62.7
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 8.9e-133 477.6 393 60.1
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 1.2e-132 477.2 389 62.0
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.2e-132 477.2 390 60.3
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.5e-132 476.9 395 59.5
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 2.0e-132 476.5 392 59.4
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.0e-132 476.5 377 62.6
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 2.0e-132 476.5 374 63.1
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 2.6e-132 476.1 366 63.4
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 3.4e-132 475.7 381 62.2
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 3.4e-132 475.7 371 62.3
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 3.4e-132 475.7 392 61.0
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 4.4e-132 475.3 365 63.0
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 4.4e-132 475.3 390 61.0
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 4.4e-132 475.3 374 62.0
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 4.4e-132 475.3 395 61.3
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 5.8e-132 474.9 380 62.1
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 7.5e-132 474.6 392 59.7
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 7.5e-132 474.6 381 62.2
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 7.5e-132 474.6 392 60.7
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 7.5e-132 474.6 374 62.8
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 9.8e-132 474.2 397 59.2
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 1.3e-131 473.8 377 62.1
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 1.3e-131 473.8 377 62.1
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.3e-131 473.8 371 62.3
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.3e-131 473.8 390 60.0
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.3e-131 473.8 371 62.0
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.7e-131 473.4 390 61.0
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.2e-131 473.0 374 62.0
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 2.2e-131 473.0 391 59.6
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 2.9e-131 472.6 377 60.7
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 3.7e-131 472.2 374 61.8
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.7e-131 472.2 390 59.7
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 3.7e-131 472.2 374 61.5
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 3.7e-131 472.2 396 59.6
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.7e-131 472.2 377 61.5
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 4.9e-131 471.9 390 59.5
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 6.4e-131 471.5 371 62.5
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 6.4e-131 471.5 390 59.5
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 6.4e-131 471.5 385 60.5
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 8.3e-131 471.1 396 60.4
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 1.1e-130 470.7 391 60.1
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.1e-130 470.7 390 59.7
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.1e-130 470.7 376 62.0
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.4e-130 470.3 390 60.0
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.4e-130 470.3 400 59.5
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.4e-130 470.3 374 61.5
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.9e-130 469.9 397 60.7
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.9e-130 469.9 397 60.7
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.9e-130 469.9 371 61.2
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.9e-130 469.9 374 61.2
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 2.4e-130 469.5 396 59.6
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.4e-130 469.5 396 59.6
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 3.2e-130 469.2 393 60.1
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.2e-130 469.2 390 59.7
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 3.2e-130 469.2 357 63.9
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 4.1e-130 468.8 387 60.5
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 4.1e-130 468.8 371 62.3
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 5.4e-130 468.4 391 59.1
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 7.1e-130 468.0 374 62.3
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 7.1e-130 468.0 380 61.3
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 7.1e-130 468.0 357 63.3
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 9.2e-130 467.6 371 60.6
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 9.2e-130 467.6 374 62.0
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 9.2e-130 467.6 374 62.0
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.2e-129 467.2 391 58.8
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 2.1e-129 466.5 396 58.1
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 2.1e-129 466.5 365 63.3
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 2.1e-129 466.5 392 59.2
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.7e-129 466.1 387 61.0
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 2.7e-129 466.1 386 60.1
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 4.6e-129 465.3 374 61.5
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 6.0e-129 464.9 390 59.2
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 6.0e-129 464.9 364 63.2
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 1.0e-128 464.2 357 62.7
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.0e-128 464.2 381 58.8
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.7e-128 463.4 371 62.0
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.7e-128 463.4 374 60.4
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 2.3e-128 463.0 390 58.7
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 3.0e-128 462.6 394 57.9
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 6.6e-128 461.5 402 58.2
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 6.6e-128 461.5 357 62.2
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-127 460.3 402 58.0
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.9e-127 459.9 394 58.1
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-127 459.9 402 57.5
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 1.9e-127 459.9 402 57.5
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 3.3e-127 459.1 394 58.4
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.3e-127 458.8 394 58.4
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 5.6e-127 458.4 402 57.2
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 9.5e-127 457.6 413 56.9
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.2e-126 457.2 402 57.7
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.6e-126 456.8 401 57.9
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.6e-126 456.8 401 57.9
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.6e-126 456.8 396 59.3
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.6e-126 456.8 365 62.2
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 2.8e-126 456.1 401 57.4
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 2.8e-126 456.1 401 57.4
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 3.6e-126 455.7 389 58.6
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 4.7e-126 455.3 387 59.4
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.3e-125 453.0 371 60.4
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 3.1e-125 452.6 393 57.5
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.0e-125 452.2 359 62.1
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 6.8e-125 451.4 374 60.4
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 4.4e-124 448.7 398 59.8
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 5.8e-124 448.4 402 56.0
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 5.8e-124 448.4 402 56.0
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 7.6e-124 448.0 402 56.2
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 9.9e-124 447.6 402 56.0
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 9.9e-124 447.6 361 61.2
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.2e-123 446.4 373 60.3
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.2e-123 446.4 432 54.9
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 1.9e-122 443.4 390 58.2
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.7e-120 436.8 396 56.1
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.0e-117 425.6 337 63.8
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 4.4e-116 422.2 387 58.1
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.7e-115 420.2 468 48.1
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 1.4e-114 417.2 364 56.6
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 5.1e-112 408.7 402 52.5
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.5e-111 406.4 358 55.3
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.3e-110 404.1 311 63.0
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.4e-109 400.6 369 54.5
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 1.4e-109 400.6 356 55.6
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.8e-109 400.2 369 54.5
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.1e-109 399.4 379 54.4
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 2.4e-106 389.8 374 56.4
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.1e-105 386.7 303 64.0
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.5e-103 380.6 351 56.1
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 5.6e-103 378.6 298 63.4
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 2.9e-91 339.7 315 54.6
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 4.2e-90 335.9 363 48.8
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 7.4e-87 325.1 355 51.5
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.7e-75 287.3 298 53.4
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 3.9e-72 276.2 217 65.0
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.1e-61 241.5 210 68.6
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 7.7e-60 235.3 332 41.0
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.9e-50 204.1 178 59.0
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 8.0e-49 198.7 161 64.0
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 9.8e-47 191.8 175 56.0
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 4.4e-39 166.4 130 62.3
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 4.4e-39 166.4 119 62.2
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.5e-36 156.8 80 96.2
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.8e-32 144.4 119 63.0
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.6e-25 121.3 154 44.2
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 8.9e-24 115.5 145 45.5
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 5.0e-19 99.8 73 60.3
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 8.1e-17 92.4 87 47.1
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 6.8e-16 89.4 61 60.7
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.0e-11 75.5 86 46.5
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.5e-10 71.6 49 57.1


User provided reference genes

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