Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 1.0e-58 229.9 121 100.0
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.1e-52 209.9 122 95.1
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 8.3e-45 183.7 120 86.7
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.0e-39 166.8 121 75.2
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-32 143.3 117 60.7
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 1.2e-32 143.3 116 62.9
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 4.7e-32 141.4 120 60.8
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 6.1e-32 141.0 120 59.2
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.4e-31 139.8 116 65.5
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.0e-31 138.7 115 67.0
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.0e-31 138.3 119 62.2
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 4.0e-31 138.3 119 61.3
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.0e-31 138.3 115 67.0
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 6.8e-31 137.5 123 61.8
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 3.4e-30 135.2 118 61.0
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 7.5e-30 134.0 123 61.0
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 9.8e-30 133.7 120 60.0
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.1e-28 130.2 120 63.3
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.4e-28 129.8 120 58.3
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.8e-28 129.4 115 60.9
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 2.4e-28 129.0 116 59.5
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 3.2e-28 128.6 117 57.3
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 3.2e-28 128.6 120 60.8
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.2e-28 128.6 120 62.5
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.1e-28 128.3 125 53.6
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.1e-28 128.3 125 53.6
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 7.0e-28 127.5 119 58.8
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.2e-27 126.7 123 56.9
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.6e-27 126.3 125 53.6
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.6e-27 126.3 120 58.3
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 2.0e-27 125.9 120 61.7
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.7e-27 125.6 124 54.0
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 3.5e-27 125.2 115 59.1
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.8e-27 124.0 125 52.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 7.8e-27 124.0 120 57.5
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 7.8e-27 124.0 114 55.3
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.3e-26 122.5 116 58.6
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.0e-26 122.1 119 56.3
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.0e-26 122.1 119 56.3
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.9e-26 121.7 120 55.8
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 5.0e-26 121.3 122 56.6
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 5.0e-26 121.3 119 56.3
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 5.0e-26 121.3 116 60.3
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 6.6e-26 120.9 117 57.3
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.9e-25 119.4 120 53.3
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.5e-25 119.0 115 58.3
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.3e-25 118.2 118 57.6
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 5.6e-25 117.9 116 52.6
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 5.6e-25 117.9 116 56.0
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 5.6e-25 117.9 118 57.6
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 7.3e-25 117.5 115 55.7
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 9.5e-25 117.1 117 54.7
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.2e-24 116.7 127 52.0
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.6e-24 116.3 115 53.9
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.6e-24 116.3 122 57.4
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 3.6e-24 115.2 130 51.5
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 8.0e-24 114.0 122 56.6
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.0e-23 113.6 118 55.9
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.0e-23 113.6 112 55.4
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.4e-23 113.2 130 50.8
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.4e-23 113.2 120 58.3
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 2.3e-23 112.5 140 50.0
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 3.1e-23 112.1 130 51.5
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 6.8e-23 110.9 120 57.5
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.2e-22 110.2 117 54.7
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.2e-22 110.2 117 54.7
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.2e-22 110.2 117 54.7
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.4e-22 108.6 119 55.5
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.4e-22 108.6 119 55.5
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.4e-22 108.6 127 54.3
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 4.4e-22 108.2 120 55.0
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.4e-22 108.2 109 56.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.8e-22 107.8 117 53.0
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 5.8e-22 107.8 114 53.5
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 7.5e-22 107.5 117 53.8
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 7.5e-22 107.5 117 53.8
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.8e-22 107.1 101 63.4
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.3e-21 106.7 119 52.9
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 2.9e-21 105.5 122 53.3
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 2.9e-21 105.5 114 52.6
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 8.3e-21 104.0 123 50.4
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.9e-20 102.8 115 54.8
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-20 102.8 123 47.2
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-20 102.8 101 62.4
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 2.4e-20 102.4 123 46.3
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.4e-20 102.4 123 46.3
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 2.4e-20 102.4 113 53.1
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 5.4e-20 101.3 124 49.2
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 7.0e-20 100.9 140 47.1
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 7.0e-20 100.9 119 48.7
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 9.2e-20 100.5 118 51.7
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.6e-19 99.8 118 46.6
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.6e-19 99.8 119 50.4
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 4.6e-19 98.2 91 57.1
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 6.0e-19 97.8 118 47.5
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 7.8e-19 97.4 107 51.4
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 7.8e-19 97.4 117 50.4
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.0e-18 97.1 110 48.2
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.0e-18 97.1 128 49.2
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.0e-18 97.1 120 46.7
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.3e-18 95.9 107 52.3
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.3e-18 95.9 107 52.3
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.3e-18 95.9 110 48.2
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 2.3e-18 95.9 122 46.7
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.9e-18 95.1 108 49.1
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 3.9e-18 95.1 108 48.1
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 5.0e-18 94.7 121 46.3
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 5.0e-18 94.7 141 45.4
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 5.0e-18 94.7 117 49.6
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 6.6e-18 94.4 109 50.5
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.6e-18 94.0 120 50.0
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 8.6e-18 94.0 120 47.5
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.1e-17 93.6 107 53.3
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.1e-17 93.6 119 46.2
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 1.1e-17 93.6 112 49.1
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.5e-17 92.4 120 49.2
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.5e-17 92.4 120 49.2
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.5e-17 90.5 120 46.7
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.2e-16 90.1 120 48.3
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 2.1e-16 89.4 131 45.8
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.8e-16 89.0 107 47.7
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 3.6e-16 88.6 120 45.0
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 4.7e-16 88.2 117 48.7
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 8.1e-16 87.4 100 49.0
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 8.1e-16 87.4 124 46.0
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.4e-15 86.7 83 54.2
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.4e-15 86.7 83 54.2
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.4e-15 86.7 113 45.1
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.4e-15 86.7 121 43.0
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 3.1e-15 85.5 129 45.7
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 6.8e-15 84.3 128 41.4
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 8.9e-15 84.0 117 47.9
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.2e-14 83.6 127 44.1
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.2e-14 83.6 115 48.7
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 2.0e-14 82.8 134 41.0
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.6e-14 82.4 117 47.0
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 2.6e-14 82.4 89 56.2
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 3.4e-14 82.0 120 45.0
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.4e-14 81.6 129 38.8
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 5.8e-14 81.3 112 43.8
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 7.5e-14 80.9 138 42.8
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 9.8e-14 80.5 153 39.2
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 9.8e-14 80.5 135 42.2
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-13 79.7 113 44.2
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.2e-13 79.3 134 41.0
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.4e-12 76.6 162 38.9
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 4.1e-12 75.1 119 40.3
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 7.1e-12 74.3 127 44.9
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 3.5e-11 72.0 126 43.7
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.9e-09 66.2 142 38.0
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 3.3e-09 65.5 113 38.1
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 4.3e-09 65.1 111 38.7
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.6e-09 64.7 101 42.6
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 9.5e-09 63.9 155 29.7
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.6e-08 63.2 158 28.5
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 2.1e-08 62.8 91 44.0
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.8e-08 62.4 112 39.3
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 6.2e-08 61.2 117 35.0
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 8.1e-08 60.8 117 40.2
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 3.1e-07 58.9 119 38.7
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 4.0e-07 58.5 126 34.9
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 4.0e-07 58.5 146 32.2
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 6.8e-07 57.8 81 46.9
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 1.5e-06 56.6 118 34.7
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 4.4e-06 55.1 100 35.0
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 5.8e-06 54.7 101 33.7
Cpa.g.sc95.59 Carica papaya HOM05D001798 ORTHO05D005040 9.9e-06 53.9 102 36.3


User provided reference genes

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