Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 5.9e-148 527.7 306 100.0
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 2.6e-119 432.6 261 91.2
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 2.7e-116 422.5 307 79.2
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 2.9e-110 402.5 397 68.0
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 4.8e-81 305.4 310 61.6
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 9.0e-80 301.2 310 61.3
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.3e-78 297.4 290 62.1
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 3.2e-77 292.7 305 57.7
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.3e-75 287.3 306 58.8
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.3e-75 287.3 306 59.2
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 1.3e-75 287.3 306 59.2
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 1.8e-75 287.0 310 58.4
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.3e-75 286.6 279 59.9
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 1.1e-74 284.3 305 57.4
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 1.1e-74 284.3 312 58.0
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 2.5e-74 283.1 305 57.7
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 2.5e-74 283.1 310 58.4
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 2.1e-73 280.0 277 60.6
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 2.4e-72 276.6 308 57.5
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 3.1e-72 276.2 323 55.7
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 4.0e-72 275.8 285 58.6
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 4.0e-72 275.8 303 57.1
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 5.3e-72 275.4 321 54.5
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 1.5e-71 273.9 313 58.5
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 1.5e-71 273.9 305 56.4
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 2.0e-71 273.5 310 56.5
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 2.6e-71 273.1 309 61.5
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 4.5e-71 272.3 314 55.1
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 2.2e-70 270.0 306 56.9
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 6.4e-70 268.5 312 54.5
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 2.5e-69 266.5 296 60.1
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 3.2e-69 266.2 313 58.1
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 5.5e-69 265.4 307 59.3
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.1e-68 263.5 305 54.1
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 6.0e-68 261.9 278 57.6
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 3.9e-67 259.2 309 60.5
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 1.5e-66 257.3 312 57.4
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 3.3e-66 256.1 322 55.3
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 3.3e-66 256.1 311 52.7
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 5.7e-66 255.4 314 53.5
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 1.3e-65 254.2 309 51.1
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.8e-65 253.1 307 56.7
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 2.8e-65 253.1 307 52.8
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 4.8e-65 252.3 390 44.4
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 3.1e-64 249.6 309 49.5
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 6.9e-64 248.4 315 54.0
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.2e-63 247.7 272 55.5
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.5e-63 247.3 309 49.2
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.0e-63 246.9 306 53.6
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.0e-63 246.9 306 53.6
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.6e-63 246.5 273 51.3
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 5.8e-63 245.4 307 50.2
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 7.6e-63 245.0 308 57.5
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 7.6e-63 245.0 308 57.5
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 1.7e-62 243.8 313 52.4
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.2e-62 243.4 309 51.1
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 3.8e-62 242.7 308 50.6
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 4.9e-62 242.3 312 54.2
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 8.4e-62 241.5 302 57.3
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.4e-61 240.7 308 51.0
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.4e-61 240.7 312 47.8
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 1.4e-61 240.7 296 51.0
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 1.9e-61 240.4 310 53.5
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 3.2e-61 239.6 314 52.2
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 3.2e-61 239.6 312 52.9
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 4.2e-61 239.2 306 50.7
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.2e-61 239.2 288 49.0
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 1.2e-60 237.7 285 56.5
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 3.5e-60 236.1 316 49.1
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 6.1e-60 235.3 277 54.9
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 1.0e-59 234.6 305 53.1
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 1.3e-59 234.2 309 50.5
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 1.8e-59 233.8 313 50.5
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 3.0e-59 233.0 307 52.4
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 3.0e-59 233.0 314 51.9
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 3.9e-59 232.6 288 53.5
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 5.1e-59 232.3 277 52.3
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 1.9e-58 230.3 310 49.4
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 3.3e-58 229.6 300 51.3
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.6e-57 227.3 309 50.5
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 1.6e-57 227.3 285 50.5
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 1.6e-57 227.3 324 48.5
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.2e-57 226.9 314 47.1
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 2.2e-57 226.9 320 48.8
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.2e-57 226.9 311 52.4
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 4.8e-57 225.7 311 48.6
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 8.2e-57 224.9 285 53.7
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 1.1e-56 224.6 316 46.2
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 4.1e-56 222.6 288 53.5
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 2.0e-55 220.3 312 49.7
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 3.4e-55 219.5 274 53.3
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 1.0e-54 218.0 312 48.7
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.1e-53 214.5 307 48.9
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 2.7e-52 209.9 273 52.0
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 4.6e-52 209.1 311 47.6
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 3.9e-51 206.1 303 45.5
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 3.9e-51 206.1 242 58.7
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 4.3e-50 202.6 260 53.8
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 5.7e-50 202.2 207 63.3
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 5.7e-50 202.2 268 48.9
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 1.3e-49 201.1 278 55.8
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 1.7e-49 200.7 316 53.8
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 6.3e-49 198.7 310 47.7
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 4.1e-48 196.1 306 49.0
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 6.9e-48 195.3 257 48.2
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.7e-46 190.7 309 46.0
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.4e-45 187.6 319 45.8
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.9e-45 187.2 264 51.1
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 3.2e-45 186.4 319 45.8
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 1.0e-43 181.4 320 45.9
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 1.0e-43 181.4 275 49.8
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 3.0e-43 179.9 312 43.9
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 2.6e-42 176.8 274 48.5
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 4.4e-42 176.0 271 49.4
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 3.7e-41 172.9 290 45.2
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 3.5e-39 166.4 314 43.0
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 3.6e-36 156.4 313 41.5
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 8.0e-36 155.2 312 40.1
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 1.4e-35 154.5 165 66.7
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 2.3e-35 153.7 266 39.1
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 3.7e-33 146.4 156 64.1
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.4e-32 144.4 201 48.8
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 1.4e-32 144.4 244 40.2
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 2.0e-31 140.6 296 34.8
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 1.3e-30 137.9 272 41.9
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 5.0e-30 136.0 248 43.5
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 2.5e-29 133.7 239 40.2
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 4.2e-29 132.9 272 41.2
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 7.2e-29 132.1 298 37.9
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.3e-27 127.1 299 34.1
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 2.4e-24 117.1 276 36.6
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 4.7e-20 102.8 108 59.3
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 1.4e-19 101.3 232 38.8
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 2.3e-19 100.5 264 33.3
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 1.3e-14 84.7 180 38.3
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 9.5e-13 78.6 77 57.1
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 4.4e-10 69.7 103 44.7
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 3.2e-08 63.5 77 48.1
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.6e-07 61.2 100 45.0
MBI13_g34035_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.7e-06 57.8 97 40.2
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 2.9e-06 57.0 60 53.3
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 3.9e-06 56.6 97 45.4


User provided reference genes

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