Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017425.2 Cucumis melo HOM05D006498 ORTHO05D006377 3.6e-208 728.4 482 100.0
CsaV3_1G031910 Cucumis sativus L. HOM05D006498 ORTHO05D006377 4.6e-179 631.7 483 90.9
ClCG06G013640 Citrullus lanatus HOM05D006498 ORTHO05D006377 1.9e-169 599.7 485 84.1
Sed0023189 Sechium edule HOM05D006498 ORTHO05D006377 1.5e-126 457.2 490 70.8
Duzib150G1211 Durio zibethinus HOM05D006498 ORTHO05D006377 6.0e-62 242.7 517 47.6
Ca_21256_v3 Cicer arietinum L. HOM05D006498 ORTHO05D006377 1.2e-59 235.0 409 49.4
FvH4_4g07150 Fragaria vesca HOM05D006498 ORTHO05D006377 2.3e-58 230.7 389 50.9
VMungo1215G1417 Vigna mungo HOM05D006498 ORTHO05D006377 5.2e-58 229.6 390 46.7
CSS0012471 Camellia sinensis var. sinensis HOM05D006498 ORTHO05D006377 5.8e-57 226.1 503 42.1
FAN12G3360 Fragaria x ananassa HOM05D006498 ORTHO05D006377 5.8e-57 226.1 332 54.8
TWI34G1139 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 5.8e-57 226.1 417 52.0
Haze_22031 Corylus avellana HOM05D006498 ORTHO05D006377 6.4e-56 222.6 428 44.9
Gohir.D13G212600 Gossypium hirsutum HOM05D006498 ORTHO05D006377 7.8e-54 215.7 464 44.4
Gorai.013G243000 Gossypium raimondii HOM05D006498 ORTHO05D006377 7.8e-54 215.7 464 44.4
Lj4g0022386 Lotus japonicus HOM05D006498 ORTHO05D006377 7.8e-54 215.7 350 47.1
FAN17G1293 Fragaria x ananassa HOM05D006498 ORTHO05D006377 1.0e-53 215.3 418 45.7
Hma1.2p1_0491F.1_g164630 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 1.7e-53 214.5 375 44.8
Manes.14G159400 Manihot esculenta HOM05D006498 ORTHO05D006377 3.0e-53 213.8 434 44.9
arahy.Tifrunner.gnm1.ann1.YNM2K2 Arachis hypogaea HOM05D006498 ORTHO05D006377 6.6e-53 212.6 401 46.1
CiPaw.07G197600 Carya illinoinensis HOM05D006498 ORTHO05D006377 2.5e-52 210.7 411 42.3
Prupe.1G074500 Prunus persica HOM05D006498 ORTHO05D006377 3.3e-52 210.3 424 47.9
Phvul.003G140900 Phaseolus vulgaris HOM05D006498 ORTHO05D006377 9.6e-52 208.8 387 43.9
Medtr4g127350 Medicago truncatula HOM05D006498 ORTHO05D006377 1.2e-51 208.4 389 43.4
Cfa013457 Carpinus fangiana HOM05D006498 ORTHO05D006377 1.6e-51 208.0 426 43.2
Atru.chr7.955 Acer truncatum HOM05D006498 ORTHO05D006377 4.7e-51 206.5 381 52.2
arahy.Tifrunner.gnm1.ann1.XIUU7W Arachis hypogaea HOM05D006498 ORTHO05D006377 4.7e-51 206.5 416 44.7
Glyma.13G101000 Glycine max HOM05D006498 ORTHO05D006377 4.7e-51 206.5 323 48.0
Nn4g25125 Nelumbo nucifera HOM05D006498 ORTHO05D006377 1.4e-50 204.9 509 41.1
GSVIVG01029313001 Vitis vinifera HOM05D006498 ORTHO05D006377 1.8e-50 204.5 374 51.1
Potri.006G075000 Populus trichocarpa HOM05D006498 ORTHO05D006377 3.1e-50 203.8 325 55.4
MD13G1239600 Malus domestica HOM05D006498 ORTHO05D006377 4.0e-50 203.4 498 49.6
Lsat_1_v5_gn_9_16541 Lactuca sativa HOM05D006498 ORTHO05D006377 5.2e-50 203.0 449 43.9
TWI32G0168 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 5.2e-50 203.0 421 41.6
Eucgr.C00107 Eucalyptus grandis HOM05D006498 ORTHO05D006377 8.9e-50 202.2 322 51.2
Dinv28799 Davidia involucrata HOM05D006498 ORTHO05D006377 1.5e-49 201.4 293 46.4
FAN22G0654 Fragaria x ananassa HOM05D006498 ORTHO05D006377 1.5e-49 201.4 442 43.7
Gohir.A13G208200 Gossypium hirsutum HOM05D006498 ORTHO05D006377 5.8e-49 199.5 371 48.0
Thecc.09G186800 Theobroma cacao HOM05D006498 ORTHO05D006377 5.8e-49 199.5 445 48.3
Cc01_g15950 Coffea canephora HOM05D006498 ORTHO05D006377 7.6e-49 199.1 367 48.0
Ciclev10008415m.g Citrus clementina HOM05D006498 ORTHO05D006377 1.3e-48 198.4 415 49.2
CAN.G844.1 Capsicum annuum HOM05D006498 ORTHO05D006377 2.2e-48 197.6 442 42.8
THA.LOC104820009 Tarenaya hassleriana HOM05D006498 ORTHO05D006377 2.2e-48 197.6 438 43.8
Aqoxy7G02850 Aquilegia oxysepala HOM05D006498 ORTHO05D006377 1.4e-47 194.9 486 41.4
CANSAT11G0487 Cannabis sativa HOM05D006498 ORTHO05D006377 1.4e-47 194.9 318 49.7
Psat0s3389g0200 Pisum sativum HOM05D006498 ORTHO05D006377 1.4e-47 194.9 329 48.9
Sc18g0007220 Simmondsia chinensis HOM05D006498 ORTHO05D006377 1.4e-47 194.9 354 45.5
PGR142G3062 Punica granatum HOM05D006498 ORTHO05D006377 1.2e-46 191.8 507 40.6
PGR142G3622 Punica granatum HOM05D006498 ORTHO05D006377 1.2e-46 191.8 507 40.6
Sopen09g019810 Solanum pennellii HOM05D006498 ORTHO05D006377 2.7e-46 190.7 317 46.4
Nitab4.5_0000038g0230 Nicotiana tabacum HOM05D006498 ORTHO05D006377 3.5e-46 190.3 497 42.7
Thhalv10022749m.g Eutrema salsugineum HOM05D006498 ORTHO05D006377 1.3e-45 188.3 394 44.4
Peaxi162Scf00235g00219 Petunia axillaris HOM05D006498 ORTHO05D006377 1.3e-45 188.3 351 44.4
Actinidia23350 Actinidia chinensis HOM05D006498 ORTHO05D006377 3.9e-45 186.8 501 38.3
Glyma.17G058700 Glycine max HOM05D006498 ORTHO05D006377 1.1e-44 185.3 316 53.2
Sabra06G0055700 Salix brachista HOM05D006498 ORTHO05D006377 1.9e-44 184.5 472 40.0
SalBow3G4321 Salvia bowleyana HOM05D006498 ORTHO05D006377 1.9e-44 184.5 427 39.6
Aa31LG8G16310 Aethionema arabicum HOM05D006498 ORTHO05D006377 3.3e-44 183.7 390 40.3
AL3G49020 Arabidopsis lyrata HOM05D006498 ORTHO05D006377 3.3e-44 183.7 428 42.3
HanXRQChr07g0190541 Helianthus annuus HOM05D006498 ORTHO05D006377 3.3e-44 183.7 366 43.4
AT2G19270 Arabidopsis thaliana HOM05D006498 ORTHO05D006377 4.3e-44 183.3 414 42.8
Nitab4.5_0005686g0030 Nicotiana tabacum HOM05D006498 ORTHO05D006377 5.6e-44 183.0 392 42.3
CDE05G1404 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 9.6e-44 182.2 355 43.7
RcHm_v2.0_Chr4g0399301 Rosa chinensis HOM05D006498 ORTHO05D006377 1.6e-43 181.4 494 43.3
MSTRG.17962 Avicennia marina HOM05D006498 ORTHO05D006377 1.5e-41 174.9 477 37.1
Lj2A1114T36 Lonicera japonica HOM05D006498 ORTHO05D006377 2.6e-41 174.1 434 40.3
Migut.N00676 Erythranthe guttata HOM05D006498 ORTHO05D006377 3.4e-41 173.7 401 40.9
unitig_60.g25575 Utricularia gibba HOM05D006498 ORTHO05D006377 5.8e-41 172.9 429 36.6
Oeu003665.1 Olea europaea HOM05D006498 ORTHO05D006377 1.3e-40 171.8 499 43.9
Hma1.2p1_0491F.1_g164640 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 1.7e-40 171.4 114 75.4
SGA_v2.0_scaffold95G28702 Striga asiatica HOM05D006498 ORTHO05D006377 1.7e-40 171.4 499 37.3
Sp3g32630 Schrenkiella parvula HOM05D006498 ORTHO05D006377 1.1e-39 168.7 396 41.7
Lalb_Chr12g0199631 Lupinus albus HOM05D006498 ORTHO05D006377 1.4e-39 168.3 106 74.5
CARHR109730 Cardamine hirsuta HOM05D006498 ORTHO05D006377 1.9e-39 167.9 391 41.9
AUR62025173 Chenopodium quinoa HOM05D006498 ORTHO05D006377 7.1e-39 166.0 263 43.0
EL10Ac8g19141 Beta vulgaris HOM05D006498 ORTHO05D006377 2.7e-38 164.1 245 43.7
BolC7t40702H Brassica oleracea HOM05D006498 ORTHO05D006377 6.0e-38 162.9 415 39.5
BraA07t27953Z Brassica rapa HOM05D006498 ORTHO05D006377 1.0e-37 162.2 372 41.7
Sed0023288 Sechium edule HOM05D006498 ORTHO05D006377 1.0e-37 162.2 473 33.8
BcaC06g36544 Brassica carinata HOM05D006498 ORTHO05D006377 1.7e-37 161.4 427 39.6
Rhsim13G0054400 Rhododendron simsii HOM05D006498 ORTHO05D006377 2.3e-37 161.0 369 38.2
C07p03100 Brassica napus HOM05D006498 ORTHO05D006377 3.0e-37 160.6 415 40.0
Carub.0003s3350 Capsella rubella HOM05D006498 ORTHO05D006377 1.9e-36 157.9 385 41.6
BcaB03g16716 Brassica carinata HOM05D006498 ORTHO05D006377 3.3e-36 157.1 371 41.2
DCAR_004773 Daucus carota HOM05D006498 ORTHO05D006377 5.6e-36 156.4 320 45.0
PSO063G6554 Papaver somniferum HOM05D006498 ORTHO05D006377 7.3e-36 156.0 350 41.4
PSO170G2385 Papaver somniferum HOM05D006498 ORTHO05D006377 9.6e-36 155.6 353 40.2
HPP92_011644 Vanilla planifolia HOM05D006498 ORTHO05D006377 9.6e-36 155.6 487 35.1
ECA247G1929 Erigeron canadensis HOM05D000109 ORTHO05D006377 8.1e-35 152.5 447 38.7
Lsat_1_v5_gn_3_41001 Lactuca sativa HOM05D006498 ORTHO05D006377 4.0e-34 150.2 103 71.8
Os02g0175900 Oryza sativa ssp. japonica HOM05D006498 ORTHO05D006377 9.0e-34 149.1 114 69.3
ATR0626G368 Amborella trichopoda HOM05D006498 ORTHO05D006377 4.5e-33 146.7 531 32.6
MBI16_g05840_MAGBIO Magnolia biondii HOM05D006498 ORTHO05D006377 7.6e-33 146.0 420 44.8
A07p01520 Brassica napus HOM05D006498 ORTHO05D006377 1.3e-32 145.2 420 39.3
Cpa.g.sc2680.1 Carica papaya HOM05D006498 ORTHO05D006377 1.3e-32 145.2 351 48.1
Zm00001eb233520 Zea mays HOM05D006498 ORTHO05D006377 1.3e-32 145.2 112 68.8
Lsat_1_v5_gn_4_158461 Lactuca sativa HOM05D006498 ORTHO05D006377 2.9e-32 144.1 124 61.3
Lsat_1_v5_gn_7_52821 Lactuca sativa HOM05D006498 ORTHO05D006377 1.4e-31 141.7 103 68.9
Lsat_1_v5_gn_5_22180 Lactuca sativa HOM05D006498 ORTHO05D006377 5.4e-31 139.8 111 66.7
vmacro02834 Vaccinium macrocarpon HOM05D006498 ORTHO05D006377 5.4e-31 139.8 443 34.3
Zm00001eb206900 Zea mays HOM05D006498 ORTHO05D006377 5.4e-31 139.8 367 39.0
Lsat_1_v5_gn_9_15580 Lactuca sativa HOM05D006498 ORTHO05D006377 2.1e-30 137.9 110 64.5
Lalb_Chr13g0299941 Lupinus albus HOM05D006498 ORTHO05D006377 1.5e-28 131.7 321 36.1
Actinidia30000 Actinidia chinensis HOM05D006498 ORTHO05D006377 5.6e-28 129.8 287 41.8
CDE05G1079 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 2.1e-27 127.9 76 84.2
SMO361G0453 Selaginella moellendorffii HOM05D006498 ORTHO05D006377 7.6e-25 119.4 120 52.5
AagrBONN_evm.TU.Sc2ySwM_228.1455 Anthoceros agrestis HOM05D006498 ORTHO05D006377 1.1e-23 115.5 444 34.0
Pp3c15_6280 Physcomitrium patens HOM05D006498 ORTHO05D006377 1.9e-23 114.8 115 54.8
COL.COLO4_06397 Corchorus olitorius HOM05D006498 ORTHO05D006377 3.5e-22 110.5 64 81.2
CBR_g12030 Chara braunii HOM05D006498 ORTHO05D006377 6.0e-22 109.8 106 51.9
Solyc09g055870.2 Solanum lycopersicum HOM05D006498 ORTHO05D006377 5.1e-21 106.7 315 37.5
Lsat_1_v5_gn_4_108221 Lactuca sativa HOM05D006498 ORTHO05D006377 4.8e-19 100.1 76 68.4
SHI03076 Sapria himalayana HOM05D006498 ORTHO05D006377 6.9e-18 96.3 54 87.0
Ah.09g231280 Amaranthus hybridus HOM05D006498 ORTHO05D006377 1.2e-17 95.5 366 36.6
Mapoly0001s0081 Marchantia polymorpha HOM05D006498 ORTHO05D006377 3.4e-17 94.0 456 28.9
Lalb_Chr13g0299961 Lupinus albus HOM05D006498 ORTHO05D006377 7.6e-17 92.8 54 81.5
QL02p046697 Quercus lobata HOM05D006498 ORTHO05D006377 2.2e-16 91.3 54 77.8
Solyc09g055850.3 Solanum lycopersicum HOM05D006498 ORTHO05D006377 1.9e-15 88.2 53 77.4
QL02p046691 Quercus lobata HOM05D006498 ORTHO05D000004 7.2e-15 86.3 264 39.0
SGA_v2.0_scaffold95G28701 Striga asiatica HOM05D006498 ORTHO05D006377 8.7e-13 79.3 57 68.4


User provided reference genes

Program Settings