Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 6.8e-65 250.8 150 100.0
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 1.4e-62 243.0 150 96.0
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 3.1e-57 225.3 150 86.7
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 6.9e-49 197.6 150 76.0
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 9.3e-38 160.6 142 66.2
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 8.7e-36 154.1 149 62.4
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 8.7e-36 154.1 144 60.4
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 9.6e-35 150.6 145 61.4
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 1.3e-34 150.2 145 62.8
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 2.1e-34 149.4 145 60.7
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 2.1e-34 149.4 97 80.4
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 4.8e-34 148.3 140 62.1
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 4.8e-34 148.3 97 81.4
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 8.1e-34 147.5 145 60.0
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 8.1e-34 147.5 145 60.0
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 1.4e-33 146.7 97 82.5
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 2.4e-33 146.0 145 60.7
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 3.1e-33 145.6 97 80.4
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 3.1e-33 145.6 97 80.4
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 2.0e-32 142.9 145 59.3
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 2.0e-32 142.9 139 64.0
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 3.4e-32 142.1 111 62.2
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 3.4e-32 142.1 139 64.0
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 2.2e-31 139.4 97 78.4
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 2.9e-31 139.0 97 77.3
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 2.9e-31 139.0 120 58.3
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 2.9e-31 139.0 142 58.5
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 3.8e-31 138.7 104 74.0
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 4.9e-31 138.3 93 82.8
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 6.4e-31 137.9 140 54.3
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 6.4e-31 137.9 140 54.3
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 6.4e-31 137.9 96 80.2
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 1.4e-30 136.7 96 80.2
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 1.9e-30 136.3 104 68.3
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 1.9e-30 136.3 130 54.6
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 3.2e-30 135.6 98 74.5
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 3.2e-30 135.6 131 54.2
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 4.2e-30 135.2 109 65.1
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 5.5e-30 134.8 97 78.4
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 5.5e-30 134.8 121 58.7
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 9.3e-30 134.0 139 60.4
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 9.3e-30 134.0 147 55.1
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 1.2e-29 133.7 121 58.7
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 1.6e-29 133.3 96 77.1
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 1.6e-29 133.3 96 77.1
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 1.6e-29 133.3 96 77.1
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 2.1e-29 132.9 121 57.9
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 2.7e-29 132.5 99 71.7
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 6.0e-29 131.3 147 55.1
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 7.9e-29 131.0 147 53.1
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 1.8e-28 129.8 147 56.5
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 3.0e-28 129.0 99 74.7
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 3.0e-28 129.0 96 76.0
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 5.1e-28 128.3 99 74.7
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 8.7e-28 127.5 97 70.1
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 1.9e-27 126.3 97 60.8
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 2.5e-27 125.9 99 73.7
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 3.3e-27 125.6 100 74.0
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 4.3e-27 125.2 103 73.8
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 4.3e-27 125.2 157 56.1
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 9.6e-27 124.0 107 69.2
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 9.6e-27 124.0 89 73.0
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 1.3e-26 123.6 102 70.6
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 6.2e-26 121.3 102 68.6
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 8.2e-26 120.9 99 71.7
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 1.1e-25 120.6 102 70.6
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 1.1e-25 120.6 99 71.7
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 1.4e-25 120.2 102 70.6
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 1.4e-25 120.2 102 70.6
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 1.4e-25 120.2 102 70.6
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 1.4e-25 120.2 102 70.6
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 1.4e-25 120.2 102 70.6
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 1.8e-25 119.8 103 68.0
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 3.1e-25 119.0 102 69.6
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 4.0e-25 118.6 100 69.0
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 6.9e-25 117.9 125 52.0
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 1.0e-23 114.0 84 61.9
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 1.3e-23 113.6 99 69.7
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 1.3e-23 113.6 99 69.7
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 1.3e-23 113.6 86 73.3
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 8.4e-23 110.9 105 65.7
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 1.9e-22 109.8 171 39.2
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 7.1e-22 107.8 92 60.9
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 2.1e-21 106.3 85 57.6
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 7.9e-21 104.4 105 61.9
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 1.3e-20 103.6 84 61.9
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 3.9e-20 102.1 93 58.1
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 2.4e-17 92.8 84 65.5
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 3.1e-17 92.4 84 65.5
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 5.3e-17 91.7 59 72.9
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 1.0e-15 87.4 103 59.2
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 3.8e-15 85.5 77 59.7
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 5.0e-15 85.1 41 80.5
Prupe.6G149200 Prunus persica HOM05D007375 ORTHO05D009293 7.9e-13 77.8 87 50.6
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 2.5e-11 72.8 56 69.6
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 4.8e-10 68.6 57 61.4
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 6.9e-09 64.7 53 62.3
COL.COLO4_25390 Corchorus olitorius HOM05D007375 ORTHO05D009293 2.2e-07 59.7 30 76.7
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 2.2e-07 59.7 36 77.8
DCAR_012259 Daucus carota HOM05D007375 ORTHO05D009293 9.4e-06 54.3 100 43.0
PGR119G2080 Punica granatum HOM05D007375 ORTHO05D009293 9.4e-06 54.3 43 67.4


User provided reference genes

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