Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017359.2 Cucumis melo HOM05D007068 ORTHO05D008590 1.4e-257 892.5 456 100.0
CsaV3_1G004370 Cucumis sativus L. HOM05D007068 ORTHO05D008590 4.9e-231 804.3 456 91.9
ClCG06G014310 Citrullus lanatus HOM05D007068 ORTHO05D008590 2.4e-177 625.9 461 74.2
Sed0003101 Sechium edule HOM05D007068 ORTHO05D008590 1.2e-160 570.5 470 67.4
CiPaw.16G093400 Carya illinoinensis HOM05D007068 ORTHO05D008590 1.9e-78 297.4 462 44.2
Cfa019656 Carpinus fangiana HOM05D007068 ORTHO05D008590 1.2e-72 278.1 471 42.3
Thecc.03G056900 Theobroma cacao HOM05D007068 ORTHO05D008590 2.3e-71 273.9 470 41.5
TAR622G0435 Trochodendron aralioides HOM05D007068 ORTHO05D008590 1.2e-67 261.5 477 39.6
Atru.chr9.1734 Acer truncatum HOM05D007068 ORTHO05D008590 2.6e-67 260.4 466 40.8
COL.COLO4_04377 Corchorus olitorius HOM05D007068 ORTHO05D008590 4.5e-67 259.6 470 41.3
CANSAT80G0386 Cannabis sativa HOM05D007068 ORTHO05D008590 9.3e-65 251.9 375 42.9
Dinv17551 Davidia involucrata HOM05D007068 ORTHO05D008590 2.7e-64 250.4 452 40.3
Eucgr.K02273 Eucalyptus grandis HOM05D007068 ORTHO05D008590 1.8e-63 247.7 468 38.0
Cc04_g06260 Coffea canephora HOM05D007068 ORTHO05D008590 5.1e-63 246.1 471 38.6
Haze_18849 Corylus avellana HOM05D007068 ORTHO05D008590 5.1e-63 246.1 510 38.6
Hma1.2p1_0669F.1_g200120 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 7.4e-62 242.3 480 39.2
Nn3g18277 Nelumbo nucifera HOM05D007068 ORTHO05D008590 6.2e-61 239.2 501 38.1
Duzib084G0836 Durio zibethinus HOM05D007068 ORTHO05D008590 1.4e-60 238.0 474 39.2
Rhsim08G0124500 Rhododendron simsii HOM05D007068 ORTHO05D008590 1.8e-60 237.7 463 39.1
RcHm_v2.0_Chr7g0178441 Rosa chinensis HOM05D007068 ORTHO05D008590 2.6e-59 233.8 366 43.2
Prupe.5G233500 Prunus persica HOM05D007068 ORTHO05D008590 1.3e-58 231.5 499 36.7
Gohir.D07G066400 Gossypium hirsutum HOM05D007068 ORTHO05D008590 2.2e-58 230.7 476 39.7
PGSC0003DMG400005672 Solanum tuberosum HOM05D007068 ORTHO05D008590 2.2e-58 230.7 474 38.4
QL10p029594 Quercus lobata HOM05D007068 ORTHO05D008590 8.4e-58 228.8 409 40.6
Gorai.001G070000 Gossypium raimondii HOM05D007068 ORTHO05D008590 1.4e-57 228.0 476 38.4
Solyc03g118700.3 Solanum lycopersicum HOM05D007068 ORTHO05D008590 5.5e-57 226.1 477 36.7
Thhalv10011472m.g Eutrema salsugineum HOM05D007068 ORTHO05D008590 7.1e-57 225.7 467 34.3
Potri.012G047000 Populus trichocarpa HOM05D007068 ORTHO05D008590 3.5e-56 223.4 480 37.9
Sp1g35530 Schrenkiella parvula HOM05D007068 ORTHO05D008590 7.9e-56 222.2 466 34.5
Gohir.A07G061700 Gossypium hirsutum HOM05D007068 ORTHO05D008590 1.8e-55 221.1 468 38.0
Manes.14G171300 Manihot esculenta HOM05D007068 ORTHO05D008590 2.3e-55 220.7 480 37.1
AL1G55220 Arabidopsis lyrata HOM05D007068 ORTHO05D008590 3.0e-55 220.3 458 34.9
Carub.0001s3769 Capsella rubella HOM05D007068 ORTHO05D008590 5.1e-55 219.5 467 35.5
SalBow1G5613 Salvia bowleyana HOM05D007068 ORTHO05D008590 5.1e-55 219.5 470 36.6
A06p04350 Brassica napus HOM05D007068 ORTHO05D008590 3.3e-54 216.9 458 34.3
FvH4_5g17330 Fragaria vesca HOM05D007068 ORTHO05D008590 4.3e-54 216.5 386 41.7
FAN18G2889 Fragaria x ananassa HOM05D007068 ORTHO05D008590 4.3e-54 216.5 386 41.7
Oeu031766.1 Olea europaea HOM05D007068 ORTHO05D008590 4.3e-54 216.5 477 36.1
GSVIVG01011540001 Vitis vinifera HOM05D007068 ORTHO05D008590 4.3e-54 216.5 458 36.9
BcaB07g33743 Brassica carinata HOM05D007068 ORTHO05D008590 5.7e-54 216.1 478 34.1
CSS0009831 Camellia sinensis var. sinensis HOM05D007068 ORTHO05D008590 7.4e-54 215.7 470 37.4
CAN.G843.56 Capsicum annuum HOM05D007068 ORTHO05D008590 1.6e-53 214.5 467 35.8
CARHR038180 Cardamine hirsuta HOM05D007068 ORTHO05D008590 1.6e-53 214.5 462 35.9
Migut.D01541 Erythranthe guttata HOM05D007068 ORTHO05D008590 2.2e-53 214.2 485 35.1
FAN13G0457 Fragaria x ananassa HOM05D007068 ORTHO05D008590 8.2e-53 212.2 384 41.4
Actinidia39838 Actinidia chinensis HOM05D007068 ORTHO05D008590 6.9e-52 209.1 463 36.3
Aa31LG10G5220 Aethionema arabicum HOM05D007068 ORTHO05D008590 1.5e-51 208.0 475 34.5
AT1G48580 Arabidopsis thaliana HOM05D007068 ORTHO05D008590 2.6e-51 207.2 480 32.5
Sabra12G0033000 Salix brachista HOM05D007068 ORTHO05D008590 7.7e-51 205.7 514 34.6
Medtr8g107330 Medicago truncatula HOM05D007068 ORTHO05D008590 8.5e-50 202.2 476 34.9
Nitab4.5_0004556g0050 Nicotiana tabacum HOM05D007068 ORTHO05D008590 9.4e-49 198.7 465 37.4
C06p03180 Brassica napus HOM05D007068 ORTHO05D008590 1.6e-48 198.0 466 32.8
Ca_17189_v3 Cicer arietinum L. HOM05D007068 ORTHO05D008590 1.6e-48 198.0 471 34.4
Nitab4.5_0003401g0040 Nicotiana tabacum HOM05D007068 ORTHO05D008590 2.7e-48 197.2 469 36.5
BraA06t23639Z Brassica rapa HOM05D007068 ORTHO05D008590 4.6e-48 196.4 488 32.2
SGA_v2.0_scaffold36G14383 Striga asiatica HOM05D007068 ORTHO05D008590 7.9e-48 195.7 474 33.8
BcaC08g43059 Brassica carinata HOM05D007068 ORTHO05D008590 1.0e-47 195.3 487 32.9
BolC6t35436H Brassica oleracea HOM05D007068 ORTHO05D008590 1.0e-47 195.3 487 32.9
Peaxi162Scf00683g00453 Petunia axillaris HOM05D007068 ORTHO05D008590 8.8e-47 192.2 463 34.8
VMungo0251G0101 Vigna mungo HOM05D007068 ORTHO05D008590 8.8e-47 192.2 383 37.6
FAN04G2769 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.5e-46 190.7 376 39.1
Cpa.g.sc3.397 Carica papaya HOM05D007068 ORTHO05D008590 5.7e-46 189.5 477 34.2
PSO478G2297 Papaver somniferum HOM05D007068 ORTHO05D008590 5.7e-46 189.5 467 34.5
MD06G1227000 Malus domestica HOM05D007068 ORTHO05D008590 3.7e-45 186.8 299 41.5
PSO017G3869 Papaver somniferum HOM05D007068 ORTHO05D008590 5.3e-44 183.0 474 32.5
Psat7g003560 Pisum sativum HOM05D007068 ORTHO05D008590 6.9e-44 182.6 465 33.1
Lalb_Chr16g0386991 Lupinus albus HOM05D007068 ORTHO05D008590 9.1e-44 182.2 471 32.7
Aqoxy3G00060 Aquilegia oxysepala HOM05D007068 ORTHO05D008590 2.0e-43 181.0 471 35.9
Hma1.2p1_0669F.1_g200130 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 2.0e-43 181.0 476 34.5
Lsat_1_v5_gn_2_14700 Lactuca sativa HOM05D007068 ORTHO05D008590 4.5e-43 179.9 501 33.5
Lj4g0019727 Lotus japonicus HOM05D007068 ORTHO05D008590 1.0e-42 178.7 464 31.9
arahy.Tifrunner.gnm1.ann1.ZH8P6D Arachis hypogaea HOM05D007068 ORTHO05D008590 1.7e-42 177.9 175 56.0
arahy.Tifrunner.gnm1.ann1.N01HH5 Arachis hypogaea HOM05D007068 ORTHO05D008590 2.2e-42 177.6 233 44.6
Phvul.002G330100 Phaseolus vulgaris HOM05D007068 ORTHO05D008590 4.2e-41 173.3 487 32.2
Peaxi162Scf00683g00454 Petunia axillaris HOM05D007068 ORTHO05D008590 4.7e-40 169.9 461 34.3
Glyma.08G054400 Glycine max HOM05D007068 ORTHO05D008590 7.9e-40 169.1 372 35.5
MBI13_g47078_MAGBIO Magnolia biondii HOM05D007068 ORTHO05D008590 2.3e-39 167.5 279 39.4
ECA238G2622 Erigeron canadensis HOM05D007068 ORTHO05D008590 3.9e-39 166.8 326 36.8
TPR.G1401 Trifolium pratense HOM05D007068 ORTHO05D008590 5.7e-38 162.9 395 34.9
DCAR_014504 Daucus carota HOM05D007068 ORTHO05D008590 2.9e-34 150.6 381 33.1
Hund10357 Selenicereus undatus HOM05D007068 ORTHO05D008590 6.1e-32 142.9 333 36.6
AUR62037972 Chenopodium quinoa HOM05D007068 ORTHO05D008590 3.9e-31 140.2 161 49.1
EL10Ac4g08480 Beta vulgaris HOM05D007068 ORTHO05D008590 1.5e-30 138.3 330 35.5
Sopen03g037660 Solanum pennellii HOM05D007068 ORTHO05D008590 3.3e-30 137.1 217 44.7
HPP92_002012 Vanilla planifolia HOM05D007068 ORTHO05D008590 1.3e-29 135.2 469 30.7
Sc10g0009180 Simmondsia chinensis HOM05D007068 ORTHO05D008590 2.4e-28 131.0 322 36.3
Ah.06g187490 Amaranthus hybridus HOM05D007068 ORTHO05D008590 7.0e-28 129.4 243 38.3
ATR0618G302 Amborella trichopoda HOM05D007068 ORTHO05D008590 5.9e-27 126.3 184 43.5
CDE02G3810 Ceratophyllum demersum HOM05D007068 ORTHO05D008590 7.7e-27 125.9 259 35.9
Ciclev10008793m.g Citrus clementina HOM05D007068 ORTHO05D008590 6.5e-26 122.9 88 71.6
VMungo0251G0567 Vigna mungo HOM05D007068 ORTHO05D008590 7.5e-22 109.4 181 37.0
Mapoly0060s0110 Marchantia polymorpha HOM05D007068 ORTHO05D008590 8.3e-21 105.9 179 36.9
HanXRQChr14g0431751 Helianthus annuus HOM05D007068 ORTHO05D008590 1.2e-19 102.1 78 62.8
SMO164G0186 Selaginella moellendorffii HOM05D007068 ORTHO05D008590 3.5e-19 100.5 173 36.4
SEGI_36605 Sequoiadendron giganteum HOM05D007068 ORTHO05D008590 1.3e-18 98.6 94 54.3
FAN08G2700 Fragaria x ananassa HOM05D007068 ORTHO05D008590 9.4e-17 92.4 111 49.5
SMO164G0105 Selaginella moellendorffii HOM05D020476 ORTHO05D008590 1.2e-16 92.0 174 33.9
Zm00001eb304630 Zea mays HOM05D007068 ORTHO05D008590 8.0e-16 89.4 314 29.0
vmacro17572 Vaccinium macrocarpon HOM05D007068 ORTHO05D008590 1.7e-13 81.6 83 55.4
AagrBONN_evm.TU.Sc2ySwM_362.2609 Anthoceros agrestis HOM05D007068 ORTHO05D008590 1.4e-12 78.6 146 37.0
unitig_8.g4506 Utricularia gibba HOM05D007068 ORTHO05D008590 2.4e-12 77.8 374 26.2
arahy.Tifrunner.gnm1.ann1.USF1F6 Arachis hypogaea HOM05D007068 ORTHO05D008590 9.1e-12 75.9 79 48.1
Pp3c3_22100 Physcomitrium patens HOM05D007068 ORTHO05D008590 3.5e-11 73.9 175 31.4
Pp3c3_22103 Physcomitrium patens HOM05D007068 ORTHO05D008590 3.5e-11 73.9 175 31.4
VMungo1215G1321 Vigna mungo HOM05D007068 ORTHO05D008590 5.5e-09 66.6 65 46.2
CBR_g21755 Chara braunii HOM05D007068 ORTHO05D008590 4.4e-06 57.0 106 34.0


User provided reference genes

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