Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 7.5e-189 663.7 332 100.0
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 1.4e-158 563.1 288 98.3
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.7e-156 556.2 288 97.6
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 3.9e-145 518.5 295 88.1
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 8.6e-145 517.3 296 87.5
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.1e-107 394.0 295 66.4
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 2.3e-105 386.3 295 65.8
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.0e-105 386.0 295 65.8
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.1e-105 385.2 295 65.8
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.1e-105 385.2 295 65.8
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.7e-103 380.2 295 63.1
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.7e-103 380.2 295 65.8
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 4.8e-103 378.6 296 64.2
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 4.8e-103 378.6 290 65.9
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 6.3e-103 378.3 295 64.1
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.6e-101 372.9 290 64.1
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.6e-101 372.9 290 64.1
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 5.9e-101 371.7 290 64.1
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.9e-101 371.7 288 66.3
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 7.7e-101 371.3 290 63.4
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 1.0e-100 370.9 295 63.4
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 1.7e-100 370.2 295 64.4
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 2.2e-100 369.8 291 63.2
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.0e-100 368.6 288 65.3
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.4e-99 367.1 290 63.4
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.9e-99 366.7 286 64.7
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.9e-99 366.7 286 64.7
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 7.2e-99 364.8 303 60.7
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 3.6e-98 362.5 289 65.1
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 7.9e-98 361.3 296 64.2
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.4e-97 360.5 291 61.5
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.5e-96 357.1 295 61.4
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 9.7e-96 354.4 285 62.1
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.3e-95 354.0 283 62.9
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.2e-95 353.2 282 61.7
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 2.2e-95 353.2 295 62.7
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 6.3e-95 351.7 295 60.7
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.2e-93 347.4 283 61.8
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.6e-93 346.3 283 61.1
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 3.4e-93 345.9 296 58.8
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 4.5e-93 345.5 283 61.1
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 1.3e-92 344.0 283 60.4
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.2e-92 343.2 291 58.4
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.9e-92 342.8 295 57.6
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 6.5e-92 341.7 295 58.3
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.1e-91 340.9 290 62.1
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.4e-91 340.5 293 59.7
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 3.2e-91 339.3 283 59.4
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.6e-90 337.0 293 58.0
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.6e-90 337.0 289 59.2
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 2.1e-90 336.7 290 59.0
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.7e-90 336.3 288 59.7
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.7e-90 336.3 299 58.9
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.6e-90 335.9 294 57.8
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 6.1e-90 335.1 285 60.7
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 8.0e-90 334.7 289 58.8
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.3e-89 333.2 298 58.1
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.9e-89 332.4 285 60.0
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.9e-89 332.4 291 58.8
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 5.2e-89 332.0 285 60.0
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 8.8e-89 331.3 293 58.4
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 8.8e-89 331.3 285 58.2
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.1e-88 330.9 292 58.9
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 3.3e-88 329.3 290 56.6
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 3.3e-88 329.3 296 56.4
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 9.7e-88 327.8 286 59.1
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 1.7e-87 327.0 293 58.4
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 2.8e-87 326.2 295 57.6
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 4.8e-87 325.5 285 60.0
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 4.8e-87 325.5 295 56.9
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 4.8e-87 325.5 301 56.1
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.8e-86 323.6 293 56.0
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.8e-86 323.6 294 57.5
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 2.4e-86 323.2 294 57.8
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 3.1e-86 322.8 295 55.9
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 4.1e-86 322.4 246 64.6
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 4.1e-86 322.4 288 56.6
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 7.0e-86 321.6 294 57.5
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 7.0e-86 321.6 285 58.9
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.2e-85 320.9 295 57.3
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.6e-85 320.5 284 59.2
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 2.0e-85 320.1 291 55.7
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 2.6e-85 319.7 284 59.2
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 3.5e-85 319.3 285 58.6
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 3.5e-85 319.3 295 55.3
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 5.9e-85 318.5 306 54.6
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 5.9e-85 318.5 295 54.9
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.0e-84 317.8 290 56.2
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.0e-84 317.8 286 57.7
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.3e-84 317.4 285 58.6
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 2.2e-84 316.6 292 55.5
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 2.2e-84 316.6 284 58.8
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 2.2e-84 316.6 291 54.6
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 6.5e-84 315.1 250 65.2
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 6.5e-84 315.1 295 54.9
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 3.2e-83 312.8 295 53.9
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 5.5e-83 312.0 301 53.2
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 7.2e-83 311.6 292 54.8
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 9.4e-83 311.2 285 57.2
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 1.6e-82 310.5 330 50.9
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.6e-82 310.5 310 52.9
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.6e-82 310.5 404 45.8
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.0e-81 307.8 289 56.7
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 1.0e-81 307.8 296 53.4
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.4e-81 307.4 289 55.4
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-81 307.4 218 69.7
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 5.2e-81 305.4 289 55.7
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 8.8e-81 304.7 287 55.4
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 8.8e-81 304.7 259 59.1
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.2e-80 304.3 331 51.4
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 2.0e-80 303.5 279 57.7
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 3.3e-80 302.8 327 52.0
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 2.2e-79 300.1 426 43.2
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 8.2e-79 298.1 316 50.3
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 8.2e-79 298.1 290 53.4
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 2.4e-78 296.6 290 52.1
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.1e-78 295.8 292 53.4
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 5.3e-78 295.4 239 62.8
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 7.0e-78 295.0 287 52.6
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 2.0e-77 293.5 326 49.7
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.0e-77 293.5 239 63.2
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 1.5e-75 287.3 207 67.1
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 4.2e-75 285.8 235 63.8
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 1.0e-73 281.2 290 52.4
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.8e-73 278.5 209 66.5
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.6e-69 267.3 206 63.1
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.0e-69 266.9 213 61.0
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 3.5e-69 266.2 291 47.1
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.9e-67 260.4 208 63.9
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 2.5e-67 260.0 298 46.6
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.2e-66 257.7 237 57.0
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 3.0e-65 253.1 231 58.9
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 2.2e-63 246.9 503 34.8
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.8e-63 246.5 169 71.0
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.3e-63 245.0 164 72.6
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.4e-62 244.2 169 70.4
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.4e-62 243.4 169 70.4
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.4e-62 243.4 172 69.8
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.2e-61 241.1 229 55.5
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.5e-59 233.4 162 70.4
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 4.0e-57 226.1 405 36.0
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 6.8e-57 225.3 165 64.2
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.0e-56 223.8 169 66.3
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.3e-51 206.5 231 51.1
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.3e-51 206.5 153 65.4
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.2e-49 199.1 193 56.5
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 8.9e-49 198.4 304 38.8
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.9e-47 193.4 251 47.4
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 2.4e-46 190.3 234 42.7
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.0e-44 183.3 300 37.7
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 7.3e-43 178.7 304 37.5
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.4e-41 174.5 293 37.2
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.4e-41 174.5 260 40.8
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.8e-41 174.1 256 41.4
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.9e-41 171.8 130 64.6
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.2e-40 171.4 110 76.4
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 8.3e-39 165.2 229 42.8
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.1e-38 164.9 319 35.1
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.2e-38 163.3 301 35.2
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.2e-37 161.4 153 56.9
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 3.0e-36 156.8 123 60.2
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 8.9e-33 145.2 296 34.1
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.4e-31 138.7 128 55.5
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-30 138.3 128 55.5
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 4.2e-30 136.3 130 52.3
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 2.1e-29 134.0 126 52.4
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 6.6e-20 102.4 126 43.7
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.5e-19 101.3 260 28.1
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.7e-15 87.8 229 33.2
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 5.4e-14 82.8 84 47.6
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 2.1e-13 80.9 84 46.4
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.1e-13 80.9 87 49.4
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 5.8e-08 62.8 310 23.2
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 6.4e-07 59.3 60 46.7
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 4.2e-06 56.6 90 36.7
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 7.1e-06 55.8 83 43.4


User provided reference genes

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