Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 2.1e-244 848.6 432 100.0
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.4e-232 808.5 433 95.6
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 3.3e-221 771.5 430 91.4
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 1.8e-203 712.6 431 85.2
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 1.0e-174 617.1 388 79.4
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 8.8e-174 614.0 435 72.9
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 6.3e-172 607.8 402 76.6
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 3.1e-171 605.5 430 71.9
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 7.0e-171 604.4 430 71.6
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 1.6e-170 603.2 377 78.5
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 7.7e-170 600.9 389 77.1
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.0e-169 600.5 424 72.4
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 2.9e-169 599.0 377 78.2
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 3.8e-169 598.6 387 76.5
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 8.6e-169 597.4 419 72.8
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.1e-168 597.0 406 74.9
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 4.2e-168 595.1 431 71.2
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 7.2e-168 594.3 382 77.2
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 7.2e-168 594.3 384 76.8
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 9.5e-168 594.0 415 71.6
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 9.5e-168 594.0 397 74.8
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 1.2e-167 593.6 430 71.6
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 2.1e-167 592.8 421 71.0
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 2.8e-167 592.4 421 71.5
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 3.6e-167 592.0 382 76.4
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 8.0e-167 590.9 396 74.7
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 8.0e-167 590.9 396 75.8
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.0e-166 590.5 379 78.4
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 1.8e-166 589.7 378 77.0
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 1.8e-166 589.7 420 71.2
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 2.3e-166 589.3 389 75.3
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 1.2e-165 587.0 433 67.9
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.5e-165 586.6 396 74.7
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.5e-165 586.6 399 74.4
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 2.0e-165 586.3 389 74.0
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 3.4e-165 585.5 409 72.9
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 4.4e-165 585.1 385 74.3
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 5.7e-165 584.7 414 70.8
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 5.7e-165 584.7 389 73.0
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 9.8e-165 583.9 394 72.1
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 9.8e-165 583.9 390 74.1
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 1.3e-164 583.6 390 74.4
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.3e-164 583.6 396 74.7
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 1.7e-164 583.2 394 72.3
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 1.7e-164 583.2 379 75.7
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 2.8e-164 582.4 376 75.0
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 3.7e-164 582.0 421 70.5
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 6.3e-164 581.3 415 70.6
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 1.1e-163 580.5 390 72.3
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 1.1e-163 580.5 380 77.6
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 4.1e-163 578.6 415 71.1
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.2e-162 577.0 409 72.6
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 1.2e-162 577.0 434 67.3
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.3e-161 573.5 418 69.9
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 8.6e-161 570.9 383 73.9
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 1.1e-160 570.5 413 70.2
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 4.3e-160 568.5 377 74.8
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 5.2e-158 561.6 403 70.5
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.2e-157 560.5 405 69.9
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.2e-157 560.5 430 68.4
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 4.1e-155 552.0 382 71.2
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.6e-154 550.1 373 73.5
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 1.6e-154 550.1 385 71.4
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 3.5e-154 548.9 385 70.9
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 3.5e-154 548.9 394 68.5
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 4.6e-154 548.5 369 72.9
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.7e-153 546.6 385 69.6
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.3e-153 546.2 384 70.3
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 3.0e-153 545.8 386 71.5
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 3.9e-153 545.4 374 73.8
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.1e-152 543.9 378 69.3
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.9e-152 543.1 395 68.1
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 1.2e-151 540.4 380 71.1
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.6e-151 540.0 373 70.2
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 4.7e-151 538.5 372 74.5
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 1.1e-150 537.3 373 71.6
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 6.8e-150 534.6 370 72.4
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 1.2e-149 533.9 374 72.2
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 1.5e-149 533.5 379 68.6
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 2.0e-149 533.1 389 70.2
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 4.4e-149 531.9 377 68.4
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 5.4e-147 525.0 395 68.4
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 6.6e-145 518.1 373 68.1
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 7.3e-144 514.6 378 67.2
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 8.1e-143 511.1 367 70.6
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 3.1e-142 509.2 350 71.1
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 3.1e-142 509.2 391 68.5
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 3.1e-142 509.2 391 68.5
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 8.3e-140 501.1 391 65.2
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 7.8e-138 494.6 351 69.5
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 1.7e-137 493.4 402 60.9
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 3.6e-135 485.7 420 58.3
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 3.6e-135 485.7 394 61.9
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 4.7e-135 485.3 398 61.1
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 6.8e-134 481.5 430 57.4
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.0e-133 479.9 396 60.4
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 7.1e-131 471.5 330 69.7
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 2.7e-130 469.5 383 61.4
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.6e-127 460.3 378 61.4
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 6.2e-127 458.4 303 72.9
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 4.9e-124 448.7 405 55.8
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 1.1e-123 447.6 376 59.8
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.9e-123 446.8 379 58.6
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 4.2e-123 445.7 402 59.7
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.1e-120 437.6 392 56.4
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 1.1e-120 437.6 363 61.2
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 3.1e-118 429.5 418 56.2
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.5e-117 427.2 352 63.6
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 3.2e-115 419.5 367 56.7
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.3e-113 413.3 304 67.8
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 5.6e-112 408.7 274 73.0
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 3.1e-110 402.9 379 56.7
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 5.3e-110 402.1 361 56.5
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 2.9e-108 396.4 259 73.4
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 9.3e-107 391.3 357 57.1
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 3.9e-105 386.0 340 57.4
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 2.6e-101 373.2 368 54.6
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 4.8e-95 352.4 353 54.1
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 3.4e-93 346.3 229 70.3
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 6.3e-87 325.5 225 70.2
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 6.5e-84 315.5 316 56.3
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.6e-72 276.9 202 71.3
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 2.5e-59 233.8 330 41.2
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.3e-57 227.3 183 66.7
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 2.8e-55 220.3 181 58.6
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 1.2e-48 198.4 219 52.5
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 1.5e-43 181.4 173 53.2
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 9.5e-43 178.7 182 50.5
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 6.2e-42 176.0 109 78.0
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 4.0e-41 173.3 123 71.5
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 8.9e-41 172.2 118 72.0
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 1.7e-39 167.9 136 68.4
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 2.9e-39 167.2 136 67.6
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 6.4e-39 166.0 117 68.4
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 5.4e-38 162.9 109 71.6
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 3.5e-37 160.2 143 58.0
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 7.8e-37 159.1 159 55.3
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 1.1e-35 155.2 127 67.7
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 3.3e-35 153.7 116 65.5
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 2.1e-34 151.0 112 65.2
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 8.6e-28 129.0 104 65.4
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 6.2e-26 122.9 91 68.1
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 2.0e-24 117.9 329 26.1
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 6.4e-23 112.8 91 64.8
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 7.1e-22 109.4 333 25.8
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 1.1e-19 102.1 74 68.9
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 7.3e-19 99.4 79 62.0
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.2e-18 98.6 73 71.2
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 1.6e-18 98.2 75 61.3
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 1.6e-18 98.2 75 61.3
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.8e-17 94.7 101 53.5
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.4e-17 94.4 63 74.6
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 2.4e-17 94.4 118 44.1
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 8.9e-17 92.4 53 86.8
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 2.6e-16 90.9 60 73.3
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 4.4e-16 90.1 73 57.5
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 7.6e-16 89.4 141 39.7
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 4.2e-14 83.6 66 63.6
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 5.4e-14 83.2 62 62.9
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 5.4e-14 83.2 62 62.9
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 5.4e-14 83.2 62 62.9
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 5.4e-14 83.2 62 62.9
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 3.5e-13 80.5 62 62.9
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 2.3e-12 77.8 63 63.5
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 1.5e-11 75.1 58 62.1
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 8.1e-10 69.3 71 50.7
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 1.1e-09 68.9 58 55.2
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 3.1e-09 67.4 72 50.0
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 2.0e-08 64.7 380 26.3
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 3.8e-07 60.5 333 27.0
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 8.4e-07 59.3 299 25.8
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 8.4e-07 59.3 370 24.6
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 3.2e-06 57.4 257 24.5
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 5.4e-06 56.6 264 26.1
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 5.4e-06 56.6 68 42.6


User provided reference genes

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