Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 4.8e-106 387.9 203 100.0
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 7.5e-99 364.0 203 94.1
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 2.2e-82 309.3 204 85.8
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 6.4e-58 228.0 168 76.2
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 3.6e-53 212.2 219 58.0
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 1.8e-52 209.9 209 58.9
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 3.1e-52 209.1 223 58.7
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 5.3e-52 208.4 204 57.4
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 5.3e-52 208.4 213 61.5
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 6.9e-52 208.0 203 62.1
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 7.6e-51 204.5 211 57.3
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 7.6e-51 204.5 218 57.8
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 9.9e-51 204.1 211 56.9
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 6.4e-50 201.4 213 56.8
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 8.4e-50 201.1 221 57.0
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 2.4e-49 199.5 212 63.7
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 4.2e-49 198.7 212 56.6
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 9.3e-49 197.6 198 60.6
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.2e-48 197.2 216 55.1
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 1.6e-48 196.8 209 56.0
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 3.5e-48 195.7 216 54.6
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 4.6e-48 195.3 216 54.6
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 1.0e-47 194.1 214 57.0
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 3.0e-47 192.6 191 59.7
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 3.9e-47 192.2 189 57.1
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 3.9e-47 192.2 188 60.6
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 3.9e-47 192.2 206 56.3
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 8.7e-47 191.0 217 60.8
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 1.9e-46 189.9 208 55.8
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 3.3e-46 189.1 205 56.6
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.6e-46 188.3 205 56.6
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 5.6e-46 188.3 209 55.5
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 9.6e-46 187.6 214 55.1
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.3e-45 187.2 205 56.6
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 1.3e-45 187.2 174 59.2
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 1.6e-45 186.8 220 53.2
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 2.1e-45 186.4 214 55.1
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.8e-45 186.0 205 56.6
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 6.9e-44 181.4 171 59.6
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 6.9e-44 181.4 197 53.3
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 9.0e-44 181.0 162 61.1
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 1.5e-43 180.3 206 56.8
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 5.8e-43 178.3 184 58.2
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 7.6e-43 177.9 195 54.9
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 8.4e-42 174.5 204 53.9
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.4e-42 174.5 204 53.9
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 1.4e-41 173.7 209 50.2
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 3.2e-41 172.6 194 56.2
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 5.5e-41 171.8 215 53.5
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 7.1e-41 171.4 215 53.5
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 2.1e-40 169.9 154 62.3
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 3.5e-40 169.1 165 58.2
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 4.6e-40 168.7 207 51.2
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 6.0e-40 168.3 215 52.1
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 6.0e-40 168.3 198 52.0
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 1.3e-39 167.2 150 59.3
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 3.9e-39 165.6 161 59.6
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 8.7e-39 164.5 189 55.0
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 1.1e-38 164.1 165 54.5
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 3.3e-38 162.5 194 51.0
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 7.4e-38 161.4 212 48.6
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 7.4e-38 161.4 197 49.7
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 7.4e-38 161.4 191 49.7
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 9.6e-38 161.0 93 80.6
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.1e-37 159.8 200 49.0
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 8.1e-37 157.9 220 50.5
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.1e-36 157.5 219 47.5
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.4e-36 157.1 177 49.7
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 1.8e-36 156.8 178 53.9
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 3.1e-36 156.0 218 49.1
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 3.1e-36 156.0 218 49.1
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 3.1e-36 156.0 218 49.1
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 6.9e-36 154.8 219 47.5
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 6.9e-36 154.8 189 47.1
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 1.2e-35 154.1 224 47.8
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 1.5e-35 153.7 103 72.8
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 2.0e-35 153.3 182 50.0
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 3.4e-35 152.5 220 47.3
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 3.4e-35 152.5 218 47.2
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 4.5e-35 152.1 219 48.9
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 5.8e-35 151.8 219 46.6
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 7.6e-35 151.4 195 48.7
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 1.0e-34 151.0 217 46.5
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.0e-34 151.0 248 45.6
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 2.2e-34 149.8 218 47.7
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 2.9e-34 149.4 223 47.5
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 2.9e-34 149.4 223 47.5
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.9e-34 149.4 180 48.9
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 6.5e-34 148.3 222 47.7
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 6.5e-34 148.3 239 48.1
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 6.5e-34 148.3 180 48.9
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 4.2e-33 145.6 244 43.4
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 9.3e-33 144.4 221 45.2
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 2.1e-32 143.3 94 72.3
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 2.7e-32 142.9 217 50.7
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 2.7e-32 142.9 217 50.7
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 7.9e-32 141.4 217 48.4
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 1.3e-31 140.6 219 48.9
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 3.0e-31 139.4 113 61.9
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 3.0e-31 139.4 95 68.4
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 2.1e-29 133.3 111 55.9
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 2.8e-29 132.9 210 44.8
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 6.3e-29 131.7 94 68.1
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 6.3e-29 131.7 94 68.1
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 6.3e-29 131.7 94 68.1
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 2.4e-28 129.8 206 42.2
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 3.1e-28 129.4 92 67.4
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 4.1e-28 129.0 203 43.3
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.2e-27 127.5 193 43.5
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 1.1e-25 120.9 88 62.5
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.1e-25 120.9 194 42.3
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 9.3e-25 117.9 88 61.4
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 2.1e-24 116.7 204 43.6
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 5.1e-23 112.1 106 56.6
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.2e-21 104.8 63 73.0
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 8.5e-18 94.7 104 52.9
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 9.4e-17 91.3 165 47.3
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 9.4e-17 91.3 83 48.2
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 2.7e-16 89.7 163 42.9
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 5.1e-15 85.5 91 45.1
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 5.1e-15 85.5 91 45.1
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 8.8e-15 84.7 58 72.4
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.5e-14 84.0 69 66.7
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 4.1e-12 75.9 97 42.3
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 4.1e-12 75.9 89 46.1
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 2.2e-10 70.1 37 73.0
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 1.4e-07 60.8 105 36.2
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 1.8e-07 60.5 36 69.4
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 1.8e-07 60.5 112 35.7
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 2.3e-07 60.1 106 34.0


User provided reference genes

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