Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 1.9e-131 472.6 254 100.0
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 4.0e-25 119.4 111 73.9
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 1.9e-19 100.5 52 92.3
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 7.6e-16 88.6 68 66.2
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 3.8e-15 86.3 52 76.9
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 1.4e-14 84.3 52 76.9
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 1.4e-14 84.3 52 78.8
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 2.4e-14 83.6 52 75.0
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 7.1e-14 82.0 81 48.1
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 7.1e-14 82.0 54 74.1
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 1.2e-13 81.3 51 74.5
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 1.2e-13 81.3 52 73.1
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 1.6e-13 80.9 50 72.0
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 2.1e-13 80.5 48 75.0
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 7.9e-13 78.6 52 67.3
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 1.0e-12 78.2 48 77.1
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 1.0e-12 78.2 52 63.5
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 1.3e-12 77.8 48 75.0
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.3e-12 77.8 49 73.5
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 1.3e-12 77.8 49 73.5
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 3.0e-12 76.6 53 67.9
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 3.0e-12 76.6 49 71.4
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 3.0e-12 76.6 52 69.2
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 3.0e-12 76.6 49 75.5
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 3.9e-12 76.3 52 69.2
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 3.9e-12 76.3 52 69.2
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 3.9e-12 76.3 52 69.2
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 5.1e-12 75.9 52 69.2
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 5.1e-12 75.9 49 69.4
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 5.1e-12 75.9 49 69.4
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 5.1e-12 75.9 52 69.2
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 6.7e-12 75.5 56 64.3
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 8.7e-12 75.1 52 69.2
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 8.7e-12 75.1 52 65.4
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 1.1e-11 74.7 52 67.3
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 1.1e-11 74.7 52 67.3
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 1.1e-11 74.7 52 65.4
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 1.5e-11 74.3 49 69.4
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 1.9e-11 73.9 49 65.3
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 1.9e-11 73.9 52 67.3
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 1.9e-11 73.9 53 64.2
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 1.9e-11 73.9 51 66.7
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.9e-11 73.9 51 66.7
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.9e-11 73.9 51 66.7
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 2.5e-11 73.6 49 67.3
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 2.5e-11 73.6 52 65.4
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 2.5e-11 73.6 52 65.4
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 4.3e-11 72.8 50 68.0
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 5.6e-11 72.4 52 61.5
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 5.6e-11 72.4 45 71.1
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 7.4e-11 72.0 52 63.5
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 7.4e-11 72.0 48 66.7
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 9.6e-11 71.6 49 67.3
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.3e-10 71.2 51 62.7
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.3e-10 71.2 51 62.7
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 1.3e-10 71.2 45 68.9
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 1.6e-10 70.9 52 61.5
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 1.6e-10 70.9 48 70.8
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 1.6e-10 70.9 48 66.7
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 1.6e-10 70.9 48 64.6
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 2.8e-10 70.1 49 65.3
ClCG06G014970 Citrullus lanatus HOM05D003405 ORTHO05D003920 6.2e-10 68.9 64 60.9
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 6.2e-10 68.9 45 68.9
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 6.2e-10 68.9 48 62.5
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 6.2e-10 68.9 45 68.9
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 8.1e-10 68.6 45 68.9
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 8.1e-10 68.6 47 66.0
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 8.1e-10 68.6 47 66.0
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 1.8e-09 67.4 52 61.5
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 1.8e-09 67.4 48 64.6
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 2.4e-09 67.0 46 65.2
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 2.4e-09 67.0 47 63.8
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 2.4e-09 67.0 47 63.8
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 5.3e-09 65.9 46 60.9
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 6.9e-09 65.5 107 43.9
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 9.0e-09 65.1 48 60.4
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 1.5e-08 64.3 48 60.4
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 2.6e-08 63.5 43 62.8
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 3.4e-08 63.2 49 65.3
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 3.4e-08 63.2 46 58.7
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 7.6e-08 62.0 47 57.4
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 1.3e-07 61.2 60 58.3
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 1.3e-07 61.2 45 57.8
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 1.7e-07 60.8 50 58.0
Zm00001eb388110 Zea mays HOM05D007790 ORTHO05D009880 3.8e-07 59.7 34 73.5
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 1.9e-06 57.4 64 53.1
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 2.4e-06 57.0 36 77.8
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 2.4e-06 57.0 41 61.0
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 3.2e-06 56.6 147 32.7
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 3.2e-06 56.6 69 46.4
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 4.2e-06 56.2 32 90.6
Haze_21718 Corylus avellana HOM05D003405 ORTHO05D003920 5.5e-06 55.8 147 32.7


User provided reference genes

Program Settings