Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017259.2 Cucumis melo HOM05D007643 ORTHO05D007801 3.4e-124 448.4 227 100.0
CsaV3_1G003240 Cucumis sativus L. HOM05D007643 ORTHO05D007801 4.6e-57 225.3 231 60.2
ClCG06G015360 Citrullus lanatus HOM05D007643 ORTHO05D007801 2.3e-56 223.0 231 58.9
Sed0015671 Sechium edule HOM05D007643 ORTHO05D007801 2.3e-48 196.4 229 52.8
Prupe.5G211300 Prunus persica HOM05D007643 ORTHO05D007801 1.1e-29 134.4 98 65.3
CiPaw.15G116100 Carya illinoinensis HOM05D007643 ORTHO05D007801 3.1e-29 132.9 90 68.9
Eucgr.K02633 Eucalyptus grandis HOM05D007643 ORTHO05D007801 2.0e-28 130.2 97 64.9
Ciclev10022625m.g Citrus clementina HOM05D007643 ORTHO05D007801 1.0e-27 127.9 94 61.7
Thecc.03G110800 Theobroma cacao HOM05D007643 ORTHO05D007801 1.3e-27 127.5 90 67.8
QL10p021414 Quercus lobata HOM05D007643 ORTHO05D007801 5.0e-27 125.6 97 62.9
RcHm_v2.0_Chr7g0183911 Rosa chinensis HOM05D007643 ORTHO05D007801 1.9e-26 123.6 97 59.8
Duzib068G1429 Durio zibethinus HOM05D007643 ORTHO05D007801 2.5e-26 123.2 90 66.7
FAN18G4512 Fragaria x ananassa HOM05D007643 ORTHO05D007801 1.2e-25 120.9 95 60.0
CANSAT11G0293 Cannabis sativa HOM05D007643 ORTHO05D007801 2.1e-25 120.2 99 60.6
Gohir.D11G038100 Gossypium hirsutum HOM05D007643 ORTHO05D007801 6.1e-25 118.6 90 65.6
FAN08G1142 Fragaria x ananassa HOM05D007643 ORTHO05D007801 1.0e-24 117.9 92 59.8
Gorai.007G040800 Gossypium raimondii HOM05D007643 ORTHO05D007801 1.4e-24 117.5 90 64.4
MD14G1217500 Malus domestica HOM05D007643 ORTHO05D007801 1.8e-24 117.1 99 56.6
COL.COLO4_28832 Corchorus olitorius HOM05D007643 ORTHO05D007801 1.5e-23 114.0 95 61.1
MD06G1206900 Malus domestica HOM05D007643 ORTHO05D007801 2.2e-22 110.2 98 54.1
Potri.012G065400 Populus trichocarpa HOM05D007643 ORTHO05D007801 2.8e-22 109.8 87 60.9
Cfa019854 Carpinus fangiana HOM05D007643 ORTHO05D007801 3.7e-22 109.4 92 57.6
Atru.chr9.639 Acer truncatum HOM05D007643 ORTHO05D007801 6.3e-22 108.6 90 58.9
Lalb_Chr23g0273871 Lupinus albus HOM05D007643 ORTHO05D007801 8.3e-22 108.2 88 55.7
Dinv36824 Davidia involucrata HOM05D007643 ORTHO05D007801 1.1e-21 107.8 94 54.3
TWI15G0080 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 1.1e-21 107.8 72 70.8
PSO782G0046 Papaver somniferum HOM05D007643 ORTHO05D007801 1.4e-21 107.5 87 59.8
Actinidia18967 Actinidia chinensis HOM05D007643 ORTHO05D007801 1.8e-21 107.1 101 49.5
Glyma.06G180500 Glycine max HOM05D007643 ORTHO05D007801 1.8e-21 107.1 88 60.2
Gohir.D12G187200 Gossypium hirsutum HOM05D007643 ORTHO05D007801 1.8e-21 107.1 66 69.7
Actinidia35057 Actinidia chinensis HOM05D007643 ORTHO05D007801 2.4e-21 106.7 101 49.5
Dinv38625 Davidia involucrata HOM05D007643 ORTHO05D007801 2.4e-21 106.7 94 54.3
Phvul.009G176200 Phaseolus vulgaris HOM05D007643 ORTHO05D007801 3.1e-21 106.3 88 59.1
Sabra12G0046800 Salix brachista HOM05D007643 ORTHO05D007801 3.1e-21 106.3 87 58.6
Gorai.008G200700 Gossypium raimondii HOM05D007643 ORTHO05D007801 4.1e-21 105.9 66 69.7
PGR044G0452 Punica granatum HOM05D007643 ORTHO05D007801 4.1e-21 105.9 98 55.1
PSO063G2669 Papaver somniferum HOM05D007643 ORTHO05D007801 1.2e-20 104.4 87 58.6
Gohir.A12G184500 Gossypium hirsutum HOM05D007643 ORTHO05D007801 2.0e-20 103.6 74 62.2
Aa31LG11G2440 Aethionema arabicum HOM05D007643 ORTHO05D007801 2.7e-20 103.2 87 52.9
TWI81G0573 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 2.7e-20 103.2 74 66.2
Glyma.04G185600 Glycine max HOM05D007643 ORTHO05D007801 2.3e-19 100.1 86 57.0
THA.LOC104800981 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 1.5e-18 97.4 80 56.2
THA.LOC104818362 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 1.5e-18 97.4 87 52.9
GSVIVG01008172001 Vitis vinifera HOM05D007643 ORTHO05D007801 1.5e-18 97.4 98 53.1
Manes.14G090200 Manihot esculenta HOM05D007643 ORTHO05D007801 3.3e-18 96.3 71 59.2
Rhsim12G0146900 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.3e-18 95.9 95 47.4
vmacro16469 Vaccinium macrocarpon HOM05D007643 ORTHO05D007801 5.6e-18 95.5 97 48.5
Sed0026794 Sechium edule HOM05D007643 ORTHO05D007801 4.7e-17 92.4 178 39.3
CSS0044770 Camellia sinensis var. sinensis HOM05D007643 ORTHO05D007801 6.1e-17 92.0 81 53.1
arahy.Tifrunner.gnm1.ann1.Z569TI Arachis hypogaea HOM05D007643 ORTHO05D007801 1.4e-16 90.9 89 51.7
Lj1g0019261 Lotus japonicus HOM05D007643 ORTHO05D007801 4.0e-16 89.4 88 51.1
TPR.G15310 Trifolium pratense HOM05D007643 ORTHO05D007801 5.2e-16 89.0 85 50.6
CDE02G0802 Ceratophyllum demersum HOM05D007643 ORTHO05D007801 1.2e-15 87.8 77 59.7
Aqoxy3G03786 Aquilegia oxysepala HOM05D007643 ORTHO05D007801 9.8e-15 84.7 88 48.9
Manes.06G079602 Manihot esculenta HOM05D007643 ORTHO05D007801 2.2e-14 83.6 71 56.3
Thhalv10004975m.g Eutrema salsugineum HOM05D010173 ORTHO05D007801 6.4e-14 82.0 61 59.0
Ca_26376_v3 Cicer arietinum L. HOM05D007643 ORTHO05D007801 1.1e-13 81.3 89 44.9
Medtr2g059060 Medicago truncatula HOM05D007643 ORTHO05D007801 1.1e-13 81.3 83 45.8
Sp2g24160 Schrenkiella parvula HOM05D010173 ORTHO05D007801 1.1e-13 81.3 56 60.7
SEGI_00634 Sequoiadendron giganteum HOM05D007643 ORTHO05D007801 3.2e-13 79.7 87 50.6
ATR0691G209 Amborella trichopoda HOM05D007643 ORTHO05D007801 5.4e-13 79.0 70 52.9
HPP92_019460 Vanilla planifolia HOM05D007643 ORTHO05D007801 7.0e-13 78.6 84 50.0
AUR62032152 Chenopodium quinoa HOM05D007643 ORTHO05D007801 1.2e-12 77.8 78 48.7
Os09g0473966 Oryza sativa ssp. japonica HOM05D007643 ORTHO05D007801 1.2e-12 77.8 82 52.4
Peaxi162Scf00017g03267 Petunia axillaris HOM05D007643 ORTHO05D007801 1.7e-11 73.9 87 43.7
Lsat_1_v5_gn_4_112541 Lactuca sativa HOM05D007643 ORTHO05D007801 3.0e-11 73.2 92 46.7
Psat1g029200 Pisum sativum HOM05D007643 ORTHO05D007801 3.9e-11 72.8 80 41.2
AUR62039686 Chenopodium quinoa HOM05D007643 ORTHO05D007801 6.6e-11 72.0 67 52.2
Oeu059396.1 Olea europaea HOM05D007643 ORTHO05D007801 8.6e-11 71.6 90 41.1
CAN.G982.32 Capsicum annuum HOM05D007643 ORTHO05D007801 1.1e-10 71.2 137 31.4
Nitab4.5_0000646g0290 Nicotiana tabacum HOM05D007643 ORTHO05D007801 1.1e-10 71.2 98 37.8
Nitab4.5_0002805g0050 Nicotiana tabacum HOM05D007643 ORTHO05D007801 1.5e-10 70.9 98 37.8
Nn3g17593 Nelumbo nucifera HOM05D007643 ORTHO05D007801 4.3e-10 69.3 46 67.4
Nitab4.5_0004190g0030 Nicotiana tabacum HOM05D007643 ORTHO05D007801 4.3e-10 69.3 88 44.3
Cc04_g08010 Coffea canephora HOM05D007643 ORTHO05D007801 5.6e-10 68.9 95 38.9
Nitab4.5_0002449g0120 Nicotiana tabacum HOM05D007643 ORTHO05D007801 5.6e-10 68.9 76 46.1
ECA232G2778 Erigeron canadensis HOM05D007643 ORTHO05D007801 7.3e-10 68.6 56 53.6
Zm00001eb101340 Zea mays HOM05D007643 ORTHO05D007801 9.5e-10 68.2 55 58.2
FvH4_5g13250 Fragaria vesca HOM05D007643 ORTHO05D007801 1.2e-09 67.8 54 55.6
unitig_746.g26846 Utricularia gibba HOM05D007643 ORTHO05D007801 1.6e-09 67.4 60 46.7
FAN13G0443 Fragaria x ananassa HOM05D007643 ORTHO05D007801 3.6e-09 66.2 47 61.7
Migut.G00548 Erythranthe guttata HOM05D007643 ORTHO05D007801 4.7e-09 65.9 88 38.6
Sopen03g033740 Solanum pennellii HOM05D007643 ORTHO05D007801 6.2e-09 65.5 82 41.5
PGSC0003DMG400024520 Solanum tuberosum HOM05D007643 ORTHO05D007801 8.0e-09 65.1 82 41.5
MSTRG.9860 Avicennia marina HOM05D007643 ORTHO05D007801 3.1e-08 63.2 74 41.9
Haze_18546 Corylus avellana HOM05D007643 ORTHO05D007801 4.0e-08 62.8 64 46.9
AL269U10022 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 8.9e-08 61.6 61 50.8
AL269U10030 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 8.9e-08 61.6 61 50.8
AL269U10040 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 8.9e-08 61.6 61 50.8
AL269U10050 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 8.9e-08 61.6 61 50.8
AL3G41370 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 8.9e-08 61.6 61 50.8
AL3G41380 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 8.9e-08 61.6 61 50.8
AL3G41390 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 8.9e-08 61.6 61 50.8
AL8G37440 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 8.9e-08 61.6 61 50.8
A03p46540 Brassica napus HOM05D010173 ORTHO05D007801 1.2e-07 61.2 64 43.8
BraA03t13778Z Brassica rapa HOM05D010173 ORTHO05D007801 1.2e-07 61.2 64 43.8
SGA_v2.0_scaffold67G22694 Striga asiatica HOM05D007643 ORTHO05D007801 1.5e-07 60.8 83 39.8
Ah.02g114340 Amaranthus hybridus HOM05D007643 ORTHO05D007801 2.0e-07 60.5 71 45.1
Cpa.g.sc3.212 Carica papaya HOM05D007643 ORTHO05D007801 2.6e-07 60.1 62 50.0
Hund02541 Selenicereus undatus HOM05D007643 ORTHO05D007801 2.6e-07 60.1 176 29.5
CARHR274520 Cardamine hirsuta HOM05D010173 ORTHO05D007801 4.4e-07 59.3 55 49.1
MSTRG.4170 Avicennia marina HOM05D007643 ORTHO05D007801 5.8e-07 58.9 71 39.4
BcaC06g33198 Brassica carinata HOM05D010173 ORTHO05D007801 7.5e-07 58.5 72 41.7
BcaNung05759 Brassica carinata HOM05D010173 ORTHO05D007801 7.5e-07 58.5 72 41.7
BcaNung02618 Brassica carinata HOM05D010173 ORTHO05D007801 9.8e-07 58.2 70 41.4
C07p44600 Brassica napus HOM05D010173 ORTHO05D007801 9.8e-07 58.2 70 41.4
BolC7t44981H Brassica oleracea HOM05D010173 ORTHO05D007801 9.8e-07 58.2 70 41.4
Carub.0008s2154 Capsella rubella HOM05D010173 ORTHO05D007801 1.7e-06 57.4 61 45.9
VMungo1309G2394 Vigna mungo HOM05D007643 ORTHO05D007801 2.2e-06 57.0 64 48.4
Zm00001eb033620 Zea mays HOM05D031404 ORTHO05D007801 8.3e-06 55.1 55 47.3


User provided reference genes

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