Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 2.5e-50 201.8 102 100.0
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 2.6e-44 181.8 103 93.2
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 4.4e-39 164.5 100 83.0
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 7.5e-39 163.7 97 84.5
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 3.0e-32 141.7 103 72.8
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 6.8e-32 140.6 95 74.7
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 5.7e-31 137.5 106 67.0
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 7.5e-31 137.1 99 68.7
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 7.5e-31 137.1 99 68.7
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.3e-30 136.3 103 68.9
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.3e-30 136.3 103 68.9
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 2.2e-30 135.6 100 69.0
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 3.7e-30 134.8 97 70.1
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 4.8e-30 134.4 99 67.7
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.8e-30 134.4 105 70.5
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 8.3e-30 133.7 102 66.7
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 8.3e-30 133.7 93 72.0
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.4e-29 132.9 105 64.8
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.8e-29 132.5 99 68.7
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.8e-29 132.5 91 72.5
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 3.1e-29 131.7 95 72.6
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 5.4e-29 131.0 94 68.1
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 7.0e-29 130.6 100 65.0
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 9.1e-29 130.2 99 65.7
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 1.2e-28 129.8 98 64.3
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.2e-28 129.8 104 67.3
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.2e-28 129.8 102 66.7
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 2.0e-28 129.0 99 64.6
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 3.5e-28 128.3 94 69.1
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 3.5e-28 128.3 91 71.4
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 4.5e-28 127.9 94 66.0
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 5.9e-28 127.5 75 88.0
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 7.7e-28 127.1 94 71.3
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 7.7e-28 127.1 101 64.4
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 7.7e-28 127.1 94 68.1
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.0e-27 126.7 100 65.0
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.0e-27 126.7 99 64.6
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.0e-27 126.7 100 63.0
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.3e-27 126.3 96 68.8
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 1.7e-27 125.9 93 67.7
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.3e-27 125.6 104 63.5
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 2.9e-27 125.2 102 67.6
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.9e-27 125.2 92 65.2
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 3.8e-27 124.8 94 66.0
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 3.8e-27 124.8 101 63.4
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 5.0e-27 124.4 100 65.0
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 6.5e-27 124.0 95 65.3
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 6.5e-27 124.0 87 69.0
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 8.6e-27 123.6 102 63.7
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 8.6e-27 123.6 95 66.3
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 1.1e-26 123.2 94 64.9
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.1e-26 123.2 98 60.2
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 1.5e-26 122.9 92 70.7
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.5e-26 122.9 98 60.2
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 1.9e-26 122.5 96 64.6
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.9e-26 122.5 95 67.4
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 1.9e-26 122.5 102 63.7
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 3.3e-26 121.7 100 63.0
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 3.3e-26 121.7 100 60.0
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 3.3e-26 121.7 103 66.0
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 3.3e-26 121.7 93 62.4
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 3.3e-26 121.7 96 64.6
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 3.3e-26 121.7 95 67.4
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 3.3e-26 121.7 94 66.0
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 4.2e-26 121.3 94 66.0
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 4.2e-26 121.3 102 62.7
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 4.2e-26 121.3 92 66.3
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 4.2e-26 121.3 89 68.5
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 4.2e-26 121.3 98 60.2
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 4.2e-26 121.3 98 60.2
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 5.5e-26 120.9 102 65.7
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 7.2e-26 120.6 102 65.7
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 9.5e-26 120.2 96 65.6
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 9.5e-26 120.2 98 59.2
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 9.5e-26 120.2 94 66.0
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 1.6e-25 119.4 91 64.8
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.6e-25 119.4 92 66.3
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 4.7e-25 117.9 96 66.7
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 4.7e-25 117.9 92 64.1
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 4.7e-25 117.9 94 63.8
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 4.7e-25 117.9 100 61.0
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 1.0e-24 116.7 95 65.3
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 1.4e-24 116.3 93 67.7
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.4e-24 116.3 93 67.7
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.4e-24 116.3 93 67.7
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.4e-24 116.3 101 60.4
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 1.8e-24 115.9 94 60.6
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.3e-24 115.5 95 66.3
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 2.3e-24 115.5 93 62.4
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 2.3e-24 115.5 94 63.8
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 3.0e-24 115.2 95 65.3
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.0e-24 115.2 93 66.7
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 6.8e-24 114.0 91 62.6
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 6.8e-24 114.0 91 62.6
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 6.8e-24 114.0 91 62.6
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 6.8e-24 114.0 96 61.5
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 8.9e-24 113.6 93 62.4
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 8.9e-24 113.6 93 62.4
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 1.5e-23 112.8 93 61.3
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 1.5e-23 112.8 93 61.3
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 2.6e-23 112.1 94 58.5
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 4.4e-23 111.3 93 60.2
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 9.8e-23 110.2 93 65.6
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 1.3e-22 109.8 101 56.4
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 6.3e-22 107.5 93 58.1
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 8.3e-22 107.1 94 57.4
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.1e-21 105.1 72 69.4
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 9.2e-21 103.6 77 67.5
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 9.2e-21 103.6 77 67.5
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 1.6e-20 102.8 97 52.6
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 5.9e-20 100.9 94 52.1
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 7.8e-20 100.5 103 52.4
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 1.0e-19 100.1 78 70.5
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 2.9e-19 98.6 110 52.7
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 2.9e-19 98.6 94 55.3
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 2.9e-19 98.6 98 58.2
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 2.9e-19 98.6 136 47.8
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 5.0e-19 97.8 110 51.8
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 5.0e-19 97.8 89 58.4
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 5.0e-19 97.8 94 53.2
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 1.5e-18 96.3 77 58.4
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 2.5e-18 95.5 89 58.4
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 2.1e-17 92.4 91 54.9
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 8.0e-17 90.5 71 60.6
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 8.0e-17 90.5 89 57.3
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 1.4e-16 89.7 78 61.5
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 1.8e-16 89.4 91 53.8
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 1.8e-16 89.4 76 64.5
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.5e-15 86.3 84 51.2
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 4.4e-15 84.7 91 49.5
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 7.5e-15 84.0 95 50.5
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 1.7e-14 82.8 101 48.5
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 3.0e-11 72.0 63 55.6
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 5.0e-11 71.2 88 46.6
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 8.6e-11 70.5 63 60.3
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 1.1e-10 70.1 80 46.2
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 1.5e-10 69.7 59 55.9
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 1.9e-10 69.3 81 48.1
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 2.5e-10 68.9 78 46.2
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.6e-09 66.2 54 57.4
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 2.1e-09 65.9 67 50.7
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 1.4e-08 63.2 71 46.5
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 2.3e-08 62.4 47 59.6
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 8.9e-08 60.5 64 45.3
Pp3c7_6970 Physcomitrium patens HOM05D005070 ORTHO05D005987 7.5e-07 57.4 70 44.3
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 1.3e-06 56.6 43 60.5


User provided reference genes

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