Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 3.4e-67 258.1 119 100.0
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 3.7e-66 254.6 119 98.3
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 2.4e-65 251.9 119 96.6
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 7.3e-62 240.4 119 88.2
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 8.1e-61 236.9 119 89.1
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.4e-60 236.1 119 86.6
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 1.4e-60 236.1 119 88.2
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 1.4e-60 236.1 119 87.4
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 1.8e-60 235.7 119 88.2
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 1.8e-60 235.7 119 88.2
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.8e-60 235.7 119 88.2
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 2.4e-60 235.3 119 87.4
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 2.4e-60 235.3 118 88.1
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 2.4e-60 235.3 119 86.6
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 3.1e-60 235.0 119 87.4
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 5.2e-60 234.2 119 88.2
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 6.8e-60 233.8 118 87.3
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 6.8e-60 233.8 119 87.4
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 6.8e-60 233.8 119 88.2
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 8.9e-60 233.4 119 87.4
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 1.5e-59 232.6 119 87.4
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.5e-59 232.6 119 88.2
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 1.5e-59 232.6 119 88.2
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.5e-59 232.6 119 87.4
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 2.0e-59 232.3 118 88.1
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 3.4e-59 231.5 119 85.7
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 3.4e-59 231.5 119 85.7
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 3.4e-59 231.5 119 85.7
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 4.4e-59 231.1 119 85.7
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 5.8e-59 230.7 119 86.6
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 5.8e-59 230.7 119 85.7
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 5.8e-59 230.7 119 85.7
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 5.8e-59 230.7 119 87.4
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 5.8e-59 230.7 118 85.6
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 7.6e-59 230.3 119 84.9
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 9.9e-59 229.9 119 84.9
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 9.9e-59 229.9 118 87.3
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.3e-58 229.6 119 84.9
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.3e-58 229.6 119 84.9
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 1.3e-58 229.6 119 86.6
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.3e-58 229.6 118 87.3
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.7e-58 229.2 119 86.6
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.7e-58 229.2 119 85.7
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 1.7e-58 229.2 119 84.0
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.2e-58 228.8 119 84.0
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 2.9e-58 228.4 119 84.9
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 3.8e-58 228.0 119 83.2
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 6.4e-58 227.3 119 84.0
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 6.4e-58 227.3 118 85.6
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 8.4e-58 226.9 118 85.6
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 1.1e-57 226.5 119 84.9
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.1e-57 226.5 118 85.6
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.1e-57 226.5 119 83.2
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 1.4e-57 226.1 119 84.9
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 1.9e-57 225.7 119 84.0
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 2.4e-57 225.3 119 83.2
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 2.4e-57 225.3 119 82.4
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 3.2e-57 224.9 117 84.6
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 4.2e-57 224.6 148 72.3
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 4.2e-57 224.6 120 84.2
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 4.2e-57 224.6 118 83.1
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 5.4e-57 224.2 119 83.2
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 5.4e-57 224.2 119 83.2
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 7.1e-57 223.8 119 84.0
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 7.1e-57 223.8 119 84.0
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 9.3e-57 223.4 119 84.0
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 9.3e-57 223.4 119 82.4
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 9.3e-57 223.4 119 82.4
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.2e-56 223.0 119 84.0
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 1.2e-56 223.0 119 84.0
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.2e-56 223.0 119 83.2
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.6e-56 222.6 119 81.5
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 1.6e-56 222.6 119 84.0
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 1.6e-56 222.6 119 84.0
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.6e-56 222.6 119 82.4
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.6e-56 222.6 119 82.4
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 1.6e-56 222.6 119 82.4
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 2.7e-56 221.9 119 82.4
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 3.5e-56 221.5 119 80.7
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 4.6e-56 221.1 119 83.2
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 7.8e-56 220.3 119 83.2
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 7.8e-56 220.3 152 68.4
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 7.8e-56 220.3 118 80.5
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 3.0e-55 218.4 119 79.8
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 3.9e-55 218.0 119 81.5
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 1.1e-54 216.5 119 80.7
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 1.5e-54 216.1 119 79.0
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 7.3e-54 213.8 119 79.0
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.8e-52 209.1 115 80.9
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 6.9e-52 207.2 117 75.2
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 6.9e-52 207.2 118 78.0
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.2e-51 206.5 117 76.1
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 6.4e-50 200.7 119 71.4
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.3e-47 193.0 95 92.6
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 3.0e-47 191.8 121 73.6
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 3.9e-47 191.4 117 70.9
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 8.7e-47 190.3 99 84.8
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 1.9e-46 189.1 108 78.7
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 9.6e-46 186.8 95 89.5
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.6e-45 186.0 95 88.4
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.6e-45 186.0 95 87.4
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 3.6e-45 184.9 100 84.0
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 1.8e-44 182.6 101 82.2
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 5.3e-44 181.0 95 87.4
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 5.8e-43 177.6 118 70.3
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.3e-42 176.4 97 82.5
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 3.8e-42 174.9 95 81.1
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 1.3e-37 159.8 116 65.5
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.7e-37 158.3 81 86.4
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 4.0e-36 154.8 81 87.7
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 4.5e-35 151.4 82 82.9
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 7.9e-32 140.6 111 55.9
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.0e-31 140.2 72 80.6
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.0e-31 140.2 111 55.9
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.3e-31 139.8 111 56.8
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 2.5e-30 135.6 111 55.9
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 6.9e-28 127.5 111 53.2
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 3.4e-27 125.2 61 82.0
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 7.6e-27 124.0 112 48.2
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 6.5e-26 120.9 63 85.7
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 1.1e-25 120.2 59 84.7
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 5.5e-25 117.9 63 85.7
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 4.6e-24 114.8 63 84.1
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 2.3e-23 112.5 95 54.7
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 8.7e-23 110.5 57 78.9
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 2.2e-21 105.9 53 84.9
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.2e-19 100.1 61 72.1
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.3e-18 96.7 51 86.3
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.3e-18 96.7 51 86.3
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 6.5e-18 94.4 48 79.2
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.4e-12 75.9 38 81.6
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 1.1e-09 67.0 31 87.1
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.2e-08 63.5 108 33.3
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 6.7e-07 57.8 45 60.0


User provided reference genes

Program Settings