Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 1.4e-196 689.5 359 100.0
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 2.7e-168 595.5 357 89.9
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 2.8e-157 558.9 363 82.9
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 2.3e-90 336.7 374 59.6
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 9.6e-57 224.9 356 45.5
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 1.1e-55 221.5 355 45.1
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 1.4e-55 221.1 357 44.3
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 8.4e-53 211.8 349 47.0
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 1.6e-51 207.6 333 43.8
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 1.0e-50 204.9 360 42.8
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 2.3e-50 203.8 336 43.2
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 5.1e-50 202.6 341 44.0
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 1.9e-49 200.7 357 41.7
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 1.5e-46 191.0 307 43.6
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 2.6e-46 190.3 358 41.9
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 2.6e-46 190.3 357 41.2
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 4.9e-45 186.0 350 40.6
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 6.5e-45 185.7 350 40.6
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 6.5e-45 185.7 356 41.6
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 3.2e-44 183.3 362 40.6
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 4.2e-44 183.0 347 42.1
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 5.5e-44 182.6 221 53.8
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 1.2e-43 181.4 352 39.2
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 4.6e-43 179.5 294 43.9
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 1.8e-42 177.6 338 41.7
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 5.1e-42 176.0 360 39.4
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.1e-41 174.9 235 50.2
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.5e-41 174.5 351 42.2
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 1.9e-41 174.1 337 39.2
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 4.3e-41 172.9 349 38.4
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 9.6e-41 171.8 385 37.1
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 2.8e-40 170.2 336 40.5
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 4.8e-40 169.5 338 41.7
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 1.4e-39 167.9 203 55.2
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.8e-39 167.5 203 55.2
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 3.1e-39 166.8 340 40.6
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 3.1e-39 166.8 334 40.4
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 3.1e-39 166.8 334 40.4
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 3.1e-39 166.8 334 40.4
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 4.0e-39 166.4 335 40.6
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 4.0e-39 166.4 335 40.6
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 4.0e-39 166.4 336 39.6
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 5.3e-39 166.0 342 38.9
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 3.4e-38 163.3 360 38.1
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 3.4e-38 163.3 360 38.1
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 3.4e-38 163.3 360 38.1
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 5.8e-38 162.5 333 40.8
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 7.6e-38 162.2 215 50.7
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 1.0e-37 161.8 347 37.8
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 6.5e-37 159.1 347 39.5
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 1.1e-36 158.3 379 37.2
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 1.1e-36 158.3 364 37.6
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 1.4e-36 157.9 366 37.2
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 1.9e-36 157.5 190 54.2
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 1.9e-36 157.5 217 48.4
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 2.5e-36 157.1 342 37.1
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 2.5e-36 157.1 187 55.1
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 2.5e-36 157.1 154 62.3
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 5.5e-36 156.0 211 47.9
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 7.1e-36 155.6 168 58.3
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 9.3e-36 155.2 190 53.2
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 1.2e-35 154.8 341 40.2
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 2.1e-35 154.1 351 37.6
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 6.1e-35 152.5 341 40.8
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 1.0e-34 151.8 353 38.8
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 1.3e-34 151.4 279 43.0
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 3.0e-34 150.2 251 44.2
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 3.0e-34 150.2 185 51.9
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 3.9e-34 149.8 273 41.8
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 1.1e-33 148.3 295 41.4
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 1.1e-33 148.3 209 49.3
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 2.5e-33 147.1 266 40.6
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 5.7e-33 146.0 353 37.4
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 1.6e-32 144.4 302 40.1
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 3.7e-32 143.3 278 41.7
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 1.1e-31 141.7 152 58.6
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 1.8e-31 141.0 159 57.9
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 4.1e-31 139.8 187 51.3
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 4.1e-31 139.8 337 36.2
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 4.5e-30 136.3 300 38.3
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 5.9e-30 136.0 275 39.3
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 7.7e-30 135.6 350 36.6
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 8.5e-29 132.1 170 52.4
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 3.2e-28 130.2 291 37.5
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 7.2e-28 129.0 103 72.8
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.2e-27 128.3 200 49.0
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 6.1e-27 125.9 128 59.4
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.8e-26 124.4 132 57.6
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 3.0e-26 123.6 349 35.8
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 5.1e-26 122.9 351 36.2
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 6.7e-26 122.5 294 37.4
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 8.8e-26 122.1 348 35.1
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 8.8e-26 122.1 268 37.7
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 8.8e-26 122.1 159 52.2
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 2.5e-25 120.6 81 81.5
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 2.5e-25 120.6 278 37.1
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 3.3e-25 120.2 298 36.6
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 3.3e-25 120.2 317 34.7
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 4.3e-25 119.8 111 64.0
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 3.7e-24 116.7 145 53.1
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 1.8e-23 114.4 296 33.1
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 4.1e-23 113.2 226 39.8
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 5.3e-23 112.8 340 34.7
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 5.3e-23 112.8 216 44.0
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 6.9e-23 112.5 259 35.5
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.2e-22 111.7 90 70.0
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 4.5e-22 109.8 320 35.3
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 1.3e-21 108.2 95 67.4
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 1.3e-21 108.2 338 32.5
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 1.7e-21 107.8 259 35.9
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 2.5e-20 104.0 217 37.8
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 3.2e-20 103.6 83 67.5
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 9.4e-20 102.1 191 45.0
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 6.7e-18 95.9 111 52.3
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 5.7e-17 92.8 60 75.0
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 2.8e-16 90.5 101 56.4
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 7.2e-12 75.9 141 39.0
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 9.4e-12 75.5 83 51.8
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 4.7e-11 73.2 61 63.9
AUR62033078 Chenopodium quinoa HOM05D000408 ORTHO05D001664 5.3e-07 59.7 36 77.8


User provided reference genes

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