Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 9.0e-112 407.1 237 100.0
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 1.1e-96 357.1 230 88.3
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 2.6e-87 325.9 277 66.8
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 3.3e-82 308.9 232 72.4
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 1.3e-46 190.7 198 53.5
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.3e-46 190.7 203 53.7
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 2.9e-46 189.5 191 58.1
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 3.9e-46 189.1 192 57.8
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 6.6e-46 188.3 196 58.2
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 8.6e-46 188.0 203 52.2
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 8.6e-46 188.0 204 54.4
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 1.9e-45 186.8 196 57.1
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 2.8e-44 183.0 191 55.5
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 6.1e-44 181.8 200 56.5
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 8.0e-44 181.4 198 52.5
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 6.8e-43 178.3 195 52.3
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 2.6e-42 176.4 194 50.5
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 2.6e-42 176.4 191 55.0
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 3.4e-42 176.0 197 50.8
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 9.8e-42 174.5 190 51.1
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 6.4e-41 171.8 163 61.3
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 6.4e-41 171.8 191 56.5
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 1.1e-40 171.0 197 49.7
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 5.4e-40 168.7 195 51.8
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.2e-39 167.5 185 55.7
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 1.6e-39 167.2 188 50.5
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 4.6e-39 165.6 166 60.2
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 4.6e-39 165.6 195 49.7
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 6.0e-39 165.2 208 49.0
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 6.0e-39 165.2 200 48.0
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.0e-38 164.5 186 50.5
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 1.3e-38 164.1 200 48.5
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 1.7e-38 163.7 192 53.6
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 1.7e-38 163.7 198 48.5
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 2.3e-38 163.3 194 47.9
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 3.0e-38 162.9 187 50.8
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 3.9e-38 162.5 189 51.3
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 6.6e-38 161.8 200 46.5
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 6.6e-38 161.8 186 50.0
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 8.6e-38 161.4 186 49.5
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 1.1e-37 161.0 194 52.6
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 1.1e-37 161.0 200 46.0
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 1.1e-37 161.0 189 47.1
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 1.5e-37 160.6 195 49.2
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.5e-37 160.6 191 52.9
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 2.5e-37 159.8 216 47.2
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 2.5e-37 159.8 189 49.7
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 3.3e-37 159.5 190 50.0
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 3.3e-37 159.5 189 50.8
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 3.3e-37 159.5 194 51.0
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 3.3e-37 159.5 195 48.7
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 3.3e-37 159.5 191 46.1
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 4.3e-37 159.1 189 51.9
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 5.6e-37 158.7 189 49.7
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 5.6e-37 158.7 192 49.0
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 5.6e-37 158.7 189 49.7
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 9.5e-37 157.9 189 50.3
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.2e-36 157.5 194 50.5
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 1.6e-36 157.1 193 48.2
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 1.6e-36 157.1 190 50.0
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.6e-36 157.1 195 48.7
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 1.6e-36 157.1 187 48.1
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 3.6e-36 156.0 200 45.5
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 3.6e-36 156.0 186 49.5
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 3.6e-36 156.0 195 48.2
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 8.0e-36 154.8 191 49.2
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 8.0e-36 154.8 210 45.2
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 8.0e-36 154.8 188 48.4
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.1e-35 154.5 194 50.0
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 1.1e-35 154.5 194 51.0
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.4e-35 154.1 200 47.5
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 1.4e-35 154.1 197 46.2
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 1.8e-35 153.7 188 50.0
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 2.3e-35 153.3 189 48.7
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 2.3e-35 153.3 196 48.5
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.3e-35 153.3 194 50.0
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 3.1e-35 152.9 197 47.2
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 3.1e-35 152.9 195 46.7
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 5.2e-35 152.1 193 50.3
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 6.8e-35 151.8 203 42.9
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 6.8e-35 151.8 190 48.9
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 1.2e-34 151.0 186 47.8
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.2e-34 151.0 190 46.8
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.2e-34 151.0 190 46.8
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 2.0e-34 150.2 197 46.2
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 2.0e-34 150.2 194 45.4
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 3.4e-34 149.4 196 44.9
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.4e-34 149.1 194 50.0
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 5.8e-34 148.7 189 46.0
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 9.8e-34 147.9 189 49.7
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 1.3e-33 147.5 192 44.3
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 3.7e-33 146.0 213 40.8
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 8.3e-33 144.8 191 49.7
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 1.1e-32 144.4 198 46.0
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 1.4e-32 144.1 198 42.4
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 2.4e-32 143.3 188 47.3
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 4.1e-32 142.5 192 45.3
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.2e-31 141.0 165 53.3
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 2.7e-31 139.8 236 39.8
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 1.0e-30 137.9 189 46.6
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 1.7e-30 137.1 181 44.8
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 2.3e-30 136.7 192 42.7
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 1.9e-29 133.7 195 44.1
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 4.3e-29 132.5 167 47.3
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 7.3e-29 131.7 187 42.8
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 1.4e-27 127.5 201 44.3
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 4.0e-27 125.9 192 39.6
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.3e-25 120.9 186 39.8
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 4.9e-25 119.0 200 41.5
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 5.6e-21 105.5 123 48.0
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 2.1e-20 103.6 165 40.6
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 3.1e-19 99.8 108 50.9
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 9.3e-16 88.2 85 52.9
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 2.1e-15 87.0 109 47.7
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 1.1e-13 81.3 86 54.7
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 1.1e-13 81.3 73 57.5
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 1.6e-12 77.4 92 48.9
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 2.8e-12 76.6 193 33.2
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 5.3e-11 72.4 280 28.9
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 8.4e-09 65.1 137 32.8
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 1.1e-08 64.7 204 32.8
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.1e-08 64.7 59 59.3
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 1.6e-07 60.8 40 75.0
CBR_g41721 Chara braunii HOM05D006240 ORTHO05D007709 6.6e-06 55.5 208 29.3


User provided reference genes

Program Settings