Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017006.2 Cucumis melo HOM05D002849 ORTHO05D009472 1.3e-52 209.5 109 100.0
CsaV3_4G037080 Cucumis sativus L. HOM05D002849 ORTHO05D009472 1.0e-46 189.9 109 92.7
ClCG05G015240 Citrullus lanatus HOM05D002849 ORTHO05D009472 2.9e-41 171.8 109 82.6
Sed0019383 Sechium edule HOM05D002849 ORTHO05D009472 5.7e-37 157.5 110 74.5
MD08G1004900 Malus domestica HOM05D002849 ORTHO05D009472 2.5e-32 142.1 109 69.7
TAR381G0186 Trochodendron aralioides HOM05D002849 ORTHO05D009472 3.2e-32 141.7 106 71.7
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 8.0e-31 137.1 108 70.4
Gohir.A06G000700 Gossypium hirsutum HOM05D002849 ORTHO05D009472 1.0e-30 136.7 109 67.0
Aqoxy5G01070 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 1.4e-30 136.3 105 64.8
Gorai.010G000900 Gossypium raimondii HOM05D002849 ORTHO05D009472 1.4e-30 136.3 109 67.0
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 1.8e-30 136.0 109 67.9
Duzib093G0992 Durio zibethinus HOM05D002849 ORTHO05D009472 1.8e-30 136.0 109 67.0
RcHm_v2.0_Chr6g0303941 Rosa chinensis HOM05D002849 ORTHO05D009472 5.2e-30 134.4 109 67.9
Ciclev10002910m.g Citrus clementina HOM05D002849 ORTHO05D009472 8.8e-30 133.7 106 68.9
Thecc.08G055000 Theobroma cacao HOM05D002849 ORTHO05D009472 8.8e-30 133.7 106 67.9
Aqoxy5G01064 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 1.5e-29 132.9 105 63.8
CiPaw.08G071000 Carya illinoinensis HOM05D002849 ORTHO05D009472 2.0e-29 132.5 109 64.2
Cfa014031 Carpinus fangiana HOM05D002849 ORTHO05D009472 4.4e-29 131.3 108 67.6
Dinv31914 Davidia involucrata HOM05D000894 ORTHO05D002325 5.7e-29 131.0 110 67.3
TWI36G1301 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 9.8e-29 130.2 109 64.2
Sopen04g035780 Solanum pennellii HOM05D002849 ORTHO05D009472 1.7e-28 129.4 109 64.2
MD11G1257900 Malus domestica HOM05D002849 ORTHO05D009472 2.8e-28 128.6 109 65.1
Nn5g27128 Nelumbo nucifera HOM05D002849 ORTHO05D009472 2.8e-28 128.6 104 64.4
Potri.002G013601 Populus trichocarpa HOM05D002849 ORTHO05D009472 2.8e-28 128.6 104 65.4
Prupe.1G357000 Prunus persica HOM05D002849 ORTHO05D009472 3.7e-28 128.3 109 66.1
QL02p013572 Quercus lobata HOM05D002849 ORTHO05D009472 3.7e-28 128.3 108 62.0
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 4.8e-28 127.9 109 65.1
TWI56G1224 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 6.3e-28 127.5 109 64.2
Medtr3g115060 Medicago truncatula HOM05D002849 ORTHO05D009472 1.1e-27 126.7 91 71.4
PGSC0003DMG400009966 Solanum tuberosum HOM05D002849 ORTHO05D009472 1.8e-27 125.9 108 62.0
CSS0028449 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D009472 2.4e-27 125.6 104 65.4
SGA_v2.0_scaffold275G46557 Striga asiatica HOM05D002849 ORTHO05D009472 2.4e-27 125.6 107 65.4
COL.COLO4_21616 Corchorus olitorius HOM05D002849 ORTHO05D009472 4.1e-27 124.8 109 62.4
Sabra02G0010600 Salix brachista HOM05D002849 ORTHO05D009472 4.1e-27 124.8 107 63.6
CANSAT80G0154 Cannabis sativa HOM05D002849 ORTHO05D009472 5.4e-27 124.4 103 65.0
CANSAT80G2323 Cannabis sativa HOM05D002849 ORTHO05D009472 5.4e-27 124.4 103 65.0
vmacro04390 Vaccinium macrocarpon HOM05D002849 ORTHO05D009472 5.4e-27 124.4 109 63.3
CAN.G311.94 Capsicum annuum HOM05D002849 ORTHO05D009472 1.2e-26 123.2 107 62.6
Rhsim07G0252900 Rhododendron simsii HOM05D002849 ORTHO05D009472 2.0e-26 122.5 110 64.5
Ca_15446_v3 Cicer arietinum L. HOM05D002849 ORTHO05D009472 4.5e-26 121.3 107 58.9
Lj1g0005069 Lotus japonicus HOM05D002849 ORTHO05D009472 5.9e-26 120.9 108 61.1
Manes.05G140800 Manihot esculenta HOM05D002849 ORTHO05D009472 5.9e-26 120.9 102 63.7
TPR.G38106 Trifolium pratense HOM05D002849 ORTHO05D009472 1.0e-25 120.2 94 66.0
unitig_82.g27114 Utricularia gibba HOM05D002849 ORTHO05D009472 1.7e-25 119.4 91 63.7
Nitab4.5_0000588g0290 Nicotiana tabacum HOM05D002849 ORTHO05D009472 3.8e-25 118.2 109 60.6
Eucgr.H01281 Eucalyptus grandis HOM05D002849 ORTHO05D009472 6.5e-25 117.5 105 61.0
Phvul.009G021100 Phaseolus vulgaris HOM05D002849 ORTHO05D009472 1.9e-24 115.9 106 60.4
VMungo1309G2595 Vigna mungo HOM05D002849 ORTHO05D009472 1.9e-24 115.9 106 60.4
arahy.Tifrunner.gnm1.ann1.501GHP Arachis hypogaea HOM05D002849 ORTHO05D009472 3.3e-24 115.2 91 63.7
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 4.2e-24 114.8 109 57.8
Cc10_g00900 Coffea canephora HOM05D002849 ORTHO05D009472 4.2e-24 114.8 107 59.8
Sp1g18150 Schrenkiella parvula HOM05D002849 ORTHO05D009472 4.2e-24 114.8 114 54.4
Atru.chr13.177 Acer truncatum HOM05D002849 ORTHO05D009472 5.5e-24 114.4 110 60.0
Migut.C00918 Erythranthe guttata HOM05D002849 ORTHO05D009472 5.5e-24 114.4 109 57.8
HanXRQChr08g0215861 Helianthus annuus HOM05D002849 ORTHO05D009472 5.5e-24 114.4 106 57.5
HanXRQChr08g0215951 Helianthus annuus HOM05D002849 ORTHO05D009472 5.5e-24 114.4 106 57.5
Sc26g0004580 Simmondsia chinensis HOM05D002849 ORTHO05D009472 5.5e-24 114.4 93 63.4
Ah.00g000480 Amaranthus hybridus HOM05D002849 ORTHO05D009472 1.2e-23 113.2 108 55.6
Lsat_1_v5_gn_8_28281 Lactuca sativa HOM05D002849 ORTHO05D009472 1.2e-23 113.2 109 55.0
Peaxi162Scf00174g01410 Petunia axillaris HOM05D002849 ORTHO05D009472 1.2e-23 113.2 106 58.5
PGR102G2189 Punica granatum HOM05D002849 ORTHO05D009472 1.6e-23 112.8 104 56.7
Solyc12g094480.3 Solanum lycopersicum HOM05D002849 ORTHO05D009472 1.6e-23 112.8 110 58.2
Sopen12g031370 Solanum pennellii HOM05D002849 ORTHO05D009472 1.6e-23 112.8 110 58.2
CARHR020890 Cardamine hirsuta HOM05D002849 ORTHO05D009472 2.8e-23 112.1 114 53.5
Psat5g010840 Pisum sativum HOM05D002849 ORTHO05D009472 2.8e-23 112.1 106 55.7
AL1G33360 Arabidopsis lyrata HOM05D002849 ORTHO05D009472 3.6e-23 111.7 114 53.5
Carub.0005s0958 Capsella rubella HOM05D002849 ORTHO05D009472 4.7e-23 111.3 114 52.6
ECA233G1055 Erigeron canadensis HOM05D002849 ORTHO05D009472 8.0e-23 110.5 98 59.2
Sp5g31300 Schrenkiella parvula HOM05D002849 ORTHO05D009472 8.0e-23 110.5 88 60.2
Actinidia37963 Actinidia chinensis HOM05D002849 ORTHO05D009472 1.0e-22 110.2 85 68.2
AUR62036770 Chenopodium quinoa HOM05D002849 ORTHO05D009472 1.0e-22 110.2 110 57.3
Thhalv10009140m.g Eutrema salsugineum HOM05D002849 ORTHO05D009472 1.4e-22 109.8 114 53.5
PGSC0003DMG400029324 Solanum tuberosum HOM05D002849 ORTHO05D009472 1.4e-22 109.8 110 56.4
FAN20G1236 Fragaria x ananassa HOM05D002849 ORTHO05D009472 2.3e-22 109.0 109 58.7
Nitab4.5_0000699g0200 Nicotiana tabacum HOM05D002849 ORTHO05D009472 2.3e-22 109.0 105 55.2
BcaB03g14321 Brassica carinata HOM05D002849 ORTHO05D009472 3.0e-22 108.6 114 52.6
Carub.0001s1990 Capsella rubella HOM05D002849 ORTHO05D009472 3.0e-22 108.6 114 51.8
AT1G20430 Arabidopsis thaliana HOM05D002849 ORTHO05D009472 4.0e-22 108.2 114 51.8
Nitab4.5_0003149g0010 Nicotiana tabacum HOM05D002849 ORTHO05D009472 4.0e-22 108.2 107 54.2
BcaNung03382 Brassica carinata HOM05D002849 ORTHO05D009472 5.2e-22 107.8 114 51.8
A07p15680 Brassica napus HOM05D002849 ORTHO05D009472 5.2e-22 107.8 114 51.8
A07p15790 Brassica napus HOM05D002849 ORTHO05D009472 5.2e-22 107.8 114 51.8
C07p23030 Brassica napus HOM05D002849 ORTHO05D009472 5.2e-22 107.8 114 51.8
BolC7t42844H Brassica oleracea HOM05D002849 ORTHO05D009472 5.2e-22 107.8 114 51.8
BraA07t29306Z Brassica rapa HOM05D002849 ORTHO05D009472 5.2e-22 107.8 114 51.8
Lalb_Chr11g0061731 Lupinus albus HOM05D002849 ORTHO05D009472 6.8e-22 107.5 92 55.4
AUR62013835 Chenopodium quinoa HOM05D002849 ORTHO05D009472 8.9e-22 107.1 110 56.4
VMungo0540G0079 Vigna mungo HOM05D002849 ORTHO05D009472 8.9e-22 107.1 104 57.7
Glyma.06G019700 Glycine max HOM05D002849 ORTHO05D009472 1.2e-21 106.7 107 56.1
Glyma.04G019400 Glycine max HOM05D002849 ORTHO05D009472 1.5e-21 106.3 107 56.1
SHI08004 Sapria himalayana HOM05D002849 ORTHO05D009472 2.6e-21 105.5 89 60.7
BcaB07g32046 Brassica carinata HOM05D002849 ORTHO05D009472 7.5e-21 104.0 114 50.9
EL10Ac2g02687 Beta vulgaris HOM05D002849 ORTHO05D009472 1.3e-20 103.2 106 51.9
Aa31LG7G4740 Aethionema arabicum HOM05D002849 ORTHO05D009472 1.7e-20 102.8 115 49.6
Actinidia29779 Actinidia chinensis HOM05D002849 ORTHO05D009472 2.2e-20 102.4 81 65.4
DCAR_016751 Daucus carota HOM05D002849 ORTHO05D009472 1.8e-19 99.4 108 50.9
THA.LOC104811451 Tarenaya hassleriana HOM05D002849 ORTHO05D009472 4.1e-19 98.2 87 55.2
Lalb_Chr01g0008401 Lupinus albus HOM05D002849 ORTHO05D009472 7.0e-19 97.4 89 58.4
ATR0661G222 Amborella trichopoda HOM05D002849 ORTHO05D009472 1.3e-17 93.2 90 51.1
SalBow7G2120 Salvia bowleyana HOM05D002849 ORTHO05D009472 1.1e-16 90.1 108 47.2
Os06g0213900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D009472 1.5e-13 79.7 90 43.3
arahy.Tifrunner.gnm1.ann1.H4T2PX Arachis hypogaea HOM05D002849 ORTHO05D009472 4.9e-12 74.7 73 53.4
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 4.9e-12 74.7 73 53.4
Zm00001eb373140 Zea mays HOM05D002849 ORTHO05D009472 2.7e-10 68.9 89 38.2
Hma1.2p1_1523F.1_g288770 Hydrangea macrophylla HOM05D002849 ORTHO05D009472 1.0e-09 67.0 52 65.4
SEGI_39053 Sequoiadendron giganteum HOM05D002849 ORTHO05D009472 5.0e-09 64.7 93 39.8


User provided reference genes

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