Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 0.0e+00 1096.3 528 100.0
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 1.1e-298 1029.2 528 94.5
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 8.6e-288 993.0 548 88.5
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 7.3e-271 936.8 524 85.9
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 2.9e-211 738.8 498 69.7
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 4.2e-210 734.9 515 68.3
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 1.4e-208 729.9 496 68.1
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 1.8e-208 729.6 496 68.1
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 1.8e-208 729.6 528 66.3
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 3.9e-208 728.4 516 66.7
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 3.3e-207 725.3 519 66.3
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 3.3e-207 725.3 523 65.8
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 5.7e-207 724.5 486 70.0
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 5.7e-207 724.5 519 66.1
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 1.7e-206 723.0 512 67.2
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 1.1e-205 720.3 488 69.5
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 1.4e-205 719.9 521 66.4
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 2.4e-205 719.2 513 67.4
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 5.3e-205 718.0 493 69.0
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 6.9e-205 717.6 511 66.5
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 2.0e-204 716.1 513 67.3
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 2.6e-204 715.7 531 64.8
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 3.4e-204 715.3 528 65.2
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 7.7e-204 714.1 488 69.5
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 1.0e-203 713.8 492 68.3
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 1.3e-203 713.4 493 68.0
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 2.9e-203 712.2 486 69.3
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 5.0e-203 711.4 507 66.9
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 8.5e-203 710.7 528 65.2
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 1.9e-202 709.5 520 65.2
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 2.5e-202 709.1 524 64.5
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 2.5e-202 709.1 508 66.5
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 3.2e-202 708.8 495 68.1
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 3.2e-202 708.8 559 62.4
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 4.2e-202 708.4 515 66.0
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 2.1e-201 706.1 512 65.2
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 2.7e-201 705.7 522 64.8
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 7.9e-201 704.1 517 64.6
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 1.4e-200 703.4 528 63.8
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 1.8e-200 703.0 498 67.3
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 2.3e-200 702.6 488 67.4
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 3.0e-200 702.2 481 68.4
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 3.0e-200 702.2 486 68.1
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 5.1e-200 701.4 512 65.2
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 8.8e-200 700.7 512 64.6
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 3.3e-199 698.7 520 64.4
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 4.4e-199 698.4 493 65.7
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 7.4e-199 697.6 514 65.8
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 9.7e-199 697.2 512 65.0
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 1.3e-198 696.8 517 63.6
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 1.7e-198 696.4 494 66.8
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 2.2e-198 696.0 518 64.9
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 3.7e-198 695.3 529 63.9
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 3.7e-198 695.3 506 66.4
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 4.8e-198 694.9 519 64.5
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 4.8e-198 694.9 527 63.8
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 6.3e-198 694.5 491 66.8
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 8.2e-198 694.1 493 65.7
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 4.1e-197 691.8 518 64.3
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 2.6e-196 689.1 522 64.2
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.0e-195 687.2 522 64.0
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 1.7e-195 686.4 484 66.3
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 6.5e-195 684.5 493 65.5
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 3.2e-194 682.2 494 64.2
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 7.2e-194 681.0 493 65.9
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 7.2e-194 681.0 508 64.8
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 1.8e-192 676.4 518 62.9
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 3.0e-192 675.6 485 64.3
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 5.2e-192 674.9 461 67.0
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.5e-191 673.3 495 64.2
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 2.0e-191 672.9 518 62.7
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 9.7e-191 670.6 479 65.8
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.7e-190 669.8 501 63.5
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.7e-190 668.7 501 63.3
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 4.8e-190 668.3 485 63.9
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 4.8e-190 668.3 515 62.9
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 8.2e-190 667.5 486 65.4
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 1.1e-189 667.2 484 65.1
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 2.4e-189 666.0 488 65.0
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 5.3e-189 664.8 491 64.6
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 5.3e-189 664.8 484 65.3
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 9.1e-189 664.1 506 63.2
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 1.6e-188 663.3 475 66.9
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 1.7e-187 659.8 506 62.8
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 1.7e-187 659.8 506 62.8
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 2.2e-187 659.4 476 66.0
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 1.1e-186 657.1 466 67.2
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 1.2e-183 647.1 466 64.4
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.3e-182 643.7 484 63.4
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 1.8e-181 639.8 531 59.9
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 5.3e-181 638.3 481 62.8
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 1.5e-178 630.2 524 59.2
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 5.5e-178 628.2 520 60.2
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 3.4e-175 619.0 490 61.4
arahy.Tifrunner.gnm1.ann1.G1SIKM Arachis hypogaea HOM05D006934 ORTHO05D008743 1.1e-165 587.4 508 59.1
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 5.6e-154 548.5 490 53.5
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 2.4e-149 533.1 385 65.7
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 8.6e-139 498.0 378 63.0
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 1.7e-134 483.8 341 67.7
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 4.6e-132 475.7 362 62.2
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 9.3e-125 451.4 368 60.6
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.5e-106 391.0 498 44.6
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 9.0e-104 381.7 320 57.8
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.4e-101 374.4 314 58.9
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 7.7e-87 325.5 239 60.3
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 1.7e-78 297.7 214 61.2
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 1.9e-69 267.7 189 66.7
Gohir.A06G101702 Gossypium hirsutum HOM05D006934 ORTHO05D008743 5.7e-66 256.1 179 67.6
SGA_v2.0_scaffold22G09909 Striga asiatica HOM05D006934 ORTHO05D008743 8.0e-52 209.1 143 65.0
Zm00001eb337170 Zea mays HOM05D006934 ORTHO05D008743 2.3e-51 207.6 148 60.8
Lsat_1_v5_gn_5_171641 Lactuca sativa HOM05D006934 ORTHO05D008743 3.8e-17 94.0 103 49.5
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 6.2e-12 76.6 56 58.9
SEGI_28803 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 5.3e-11 73.6 78 50.0
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 1.7e-09 68.6 104 37.5


User provided reference genes

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