Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 3.5e-99 365.2 212 100.0
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 3.1e-95 352.1 212 96.2
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.2e-91 340.1 212 95.3
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.9e-81 306.2 210 76.2
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 3.0e-66 255.8 206 71.8
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 6.7e-66 254.6 206 74.3
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 6.9e-63 244.6 206 62.6
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.5e-62 243.4 206 63.1
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.0e-62 243.0 206 65.0
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 2.6e-62 242.7 206 63.1
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 3.4e-62 242.3 206 62.6
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 4.5e-62 241.9 207 63.8
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 5.8e-62 241.5 207 63.8
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 1.0e-61 240.7 206 62.1
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 6.5e-61 238.0 207 62.8
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 2.7e-59 232.6 206 61.2
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 6.1e-59 231.5 198 60.1
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.0e-58 230.7 212 59.0
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.0e-58 230.7 212 59.0
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 8.7e-58 227.6 206 59.2
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 2.5e-57 226.1 200 60.0
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 7.4e-57 224.6 206 59.2
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 1.6e-56 223.4 206 56.3
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 2.2e-56 223.0 201 59.2
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 3.7e-56 222.2 203 58.1
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 4.8e-56 221.9 207 58.0
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 8.2e-56 221.1 204 58.3
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 8.2e-56 221.1 207 58.0
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 1.8e-55 219.9 208 56.7
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 2.4e-55 219.5 197 59.4
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 6.9e-55 218.0 207 57.0
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.2e-54 217.2 213 55.9
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.6e-54 216.1 207 56.5
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.7e-53 213.4 213 54.5
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.9e-53 212.6 196 58.7
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 6.5e-53 211.5 197 57.9
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 2.5e-52 209.5 204 54.9
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 5.5e-52 208.4 203 54.2
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 7.2e-52 208.0 187 59.9
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 7.2e-52 208.0 196 66.3
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 9.4e-52 207.6 196 57.7
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 9.4e-52 207.6 196 56.6
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.1e-51 206.5 202 55.0
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 2.7e-51 206.1 202 55.4
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 3.0e-50 202.6 206 59.7
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 5.1e-50 201.8 206 53.4
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 6.7e-50 201.4 189 55.0
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.5e-49 200.3 201 54.2
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.5e-49 200.3 201 54.2
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.5e-49 200.3 188 55.9
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 2.0e-49 199.9 212 51.4
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 2.5e-49 199.5 199 54.3
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 5.7e-49 198.4 197 56.3
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 5.7e-49 198.4 198 54.5
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.3e-48 197.2 202 55.0
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.2e-48 196.4 197 52.8
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 2.2e-48 196.4 206 53.4
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.8e-48 196.1 178 61.2
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 4.8e-48 195.3 206 52.4
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 6.3e-48 194.9 190 53.7
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.4e-47 193.0 212 52.4
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 5.3e-47 191.8 203 48.3
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.5e-46 190.3 204 49.5
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.5e-46 190.3 203 49.3
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.0e-46 189.9 190 52.1
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 4.5e-46 188.7 199 58.8
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 5.9e-46 188.3 206 49.0
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 3.8e-45 185.7 206 50.0
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 3.8e-45 185.7 201 52.7
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 1.4e-44 183.7 203 46.8
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 2.5e-44 183.0 198 53.0
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 3.2e-44 182.6 213 49.3
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 9.4e-44 181.0 213 48.8
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 1.6e-43 180.3 204 51.0
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 3.6e-43 179.1 200 49.0
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 4.7e-43 178.7 135 65.2
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 4.7e-43 178.7 212 47.2
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 7.9e-43 177.9 210 55.7
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.0e-42 177.6 190 52.1
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.4e-42 177.2 198 54.5
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 2.3e-42 176.4 200 48.5
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 2.3e-42 176.4 200 48.5
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 3.9e-42 175.6 135 63.7
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 3.9e-42 175.6 198 50.0
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.5e-41 173.7 208 49.0
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 4.4e-41 172.2 212 47.2
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 7.4e-41 171.4 170 55.3
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 7.4e-41 171.4 199 46.2
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.3e-40 170.6 199 48.7
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 1.3e-40 170.6 198 48.5
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.7e-40 170.2 137 61.3
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 2.2e-40 169.9 197 46.7
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 3.1e-39 166.0 200 48.5
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 5.3e-39 165.2 209 49.3
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 5.3e-39 165.2 209 49.3
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 5.3e-39 165.2 188 46.8
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 2.6e-38 162.9 196 45.9
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 2.6e-38 162.9 197 45.7
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 4.5e-38 162.2 196 45.4
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.3e-37 160.6 198 47.0
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 2.9e-37 159.5 208 48.6
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 2.9e-37 159.5 209 48.3
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 6.5e-37 158.3 222 43.7
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.1e-36 157.5 222 43.7
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.5e-36 157.1 182 48.9
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 1.5e-36 157.1 209 47.8
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.9e-36 156.8 198 46.0
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.9e-36 156.8 204 43.1
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 1.5e-33 147.1 201 43.3
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 2.6e-33 146.4 199 45.7
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 2.7e-30 136.3 219 41.6
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 2.5e-28 129.8 160 45.6
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 1.0e-26 124.4 200 38.5
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 4.0e-26 122.5 186 45.2
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 4.0e-26 122.5 120 57.5
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 5.2e-26 122.1 196 37.2
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 5.2e-26 122.1 189 40.2
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 8.8e-26 121.3 196 36.7
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 8.8e-26 121.3 196 36.7
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 1.2e-25 120.9 209 36.8
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 9.8e-25 117.9 196 36.2
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.7e-24 117.1 85 67.1
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 4.5e-22 109.0 200 36.5
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 5.9e-22 108.6 200 34.5
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 7.7e-22 108.2 120 51.7
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 5.0e-21 105.5 210 34.3
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 6.5e-21 105.1 206 34.0
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 2.5e-20 103.2 72 76.4
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.2e-17 94.4 169 33.1
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 2.6e-17 93.2 198 34.3
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 3.4e-17 92.8 160 31.2
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 3.4e-17 92.8 160 36.9
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 8.3e-16 88.2 135 34.8
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 8.3e-16 88.2 113 38.9
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 4.1e-15 85.9 154 37.7
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 2.5e-12 76.6 94 45.7
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 9.5e-12 74.7 95 36.8
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 4.7e-11 72.4 140 30.7
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 2.6e-09 66.6 50 58.0
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 5.9e-06 55.5 114 31.6


User provided reference genes

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