Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016918.2 Cucumis melo HOM05D002027 ORTHO05D007928 3.2e-231 804.7 397 100.0
CsaV3_4G036100 Cucumis sativus L. HOM05D002027 ORTHO05D007928 2.6e-196 688.7 437 83.5
ClCG05G015810 Citrullus lanatus HOM05D002027 ORTHO05D007928 1.6e-193 679.5 434 81.8
Sed0020055 Sechium edule HOM05D002027 ORTHO05D007928 4.3e-159 565.1 392 76.5
Haze_18309 Corylus avellana HOM05D002027 ORTHO05D007928 4.8e-134 481.9 440 58.4
Cfa017863 Carpinus fangiana HOM05D000120 ORTHO05D007928 1.1e-133 480.7 438 58.9
Dinv22945 Davidia involucrata HOM05D002027 ORTHO05D007928 5.3e-125 451.8 435 55.6
Manes.03G054000 Manihot esculenta HOM05D002027 ORTHO05D007928 1.2e-124 450.7 440 54.3
CiPaw.16G067400 Carya illinoinensis HOM05D002027 ORTHO05D007928 1.7e-123 446.8 433 58.2
Potri.018G048500 Populus trichocarpa HOM05D002027 ORTHO05D007928 3.0e-120 436.0 440 52.7
Sabra18G0046200 Salix brachista HOM05D002027 ORTHO05D007928 3.0e-120 436.0 423 53.9
Thecc.09G064800 Theobroma cacao HOM05D002027 ORTHO05D007928 2.8e-118 429.5 442 52.7
TAR636G2984 Trochodendron aralioides HOM05D002027 ORTHO05D007928 4.8e-118 428.7 436 53.7
CANSAT25G2836 Cannabis sativa HOM05D002027 ORTHO05D007928 4.5e-116 422.2 441 53.7
Prupe.1G403200 Prunus persica HOM05D002027 ORTHO05D007928 1.7e-115 420.2 433 54.3
RcHm_v2.0_Chr6g0311981 Rosa chinensis HOM05D002027 ORTHO05D007928 1.7e-115 420.2 440 53.6
Gorai.010G092800 Gossypium raimondii HOM05D002027 ORTHO05D007928 2.2e-115 419.9 442 52.7
Actinidia25687 Actinidia chinensis HOM05D002027 ORTHO05D007928 3.8e-115 419.1 440 52.3
Gohir.D06G079600 Gossypium hirsutum HOM05D002027 ORTHO05D007928 1.1e-114 417.5 442 52.5
Potri.006G219600 Populus trichocarpa HOM05D002027 ORTHO05D007928 1.9e-114 416.8 440 51.4
FAN27G2495 Fragaria x ananassa HOM05D002027 ORTHO05D007928 1.2e-113 414.1 425 54.1
GSVIVG01035482001 Vitis vinifera HOM05D002027 ORTHO05D007928 2.7e-113 412.9 440 52.5
FAN24G3017 Fragaria x ananassa HOM05D002027 ORTHO05D007928 4.7e-113 412.1 432 53.0
Sabra06G0169500 Salix brachista HOM05D002027 ORTHO05D007928 5.7e-111 405.2 440 49.8
TWI34G0836 Tripterygium wilfordii HOM05D002027 ORTHO05D007928 3.7e-110 402.5 409 54.0
FvH4_2g30870 Fragaria vesca HOM05D002027 ORTHO05D007928 1.8e-109 400.2 440 51.8
Ciclev10008420m.g Citrus clementina HOM05D002027 ORTHO05D007928 2.0e-108 396.7 440 51.6
MD15G1048900 Malus domestica HOM05D002027 ORTHO05D007928 4.5e-108 395.6 428 51.9
Nn8g38643 Nelumbo nucifera HOM05D002027 ORTHO05D007928 4.5e-108 395.6 420 51.2
FAN20G1907 Fragaria x ananassa HOM05D000120 ORTHO05D000068 1.3e-107 394.0 435 51.3
Duzib168G1118 Durio zibethinus HOM05D002027 ORTHO05D007928 2.9e-107 392.9 394 54.3
Rhsim06G0100500 Rhododendron simsii HOM05D002027 ORTHO05D007928 1.5e-106 390.6 440 49.3
Hund25572 Selenicereus undatus HOM05D002027 ORTHO05D007928 7.2e-106 388.3 425 51.8
MD08G1072900 Malus domestica HOM05D002027 ORTHO05D007928 1.0e-104 384.4 428 50.9
Nn6g35623 Nelumbo nucifera HOM05D002027 ORTHO05D007928 1.0e-104 384.4 440 48.6
Lj7A214T27 Lonicera japonica HOM05D002027 ORTHO05D007928 3.7e-102 375.9 439 49.7
Gohir.A06G080100 Gossypium hirsutum HOM05D002027 ORTHO05D007928 1.2e-100 370.9 394 52.8
Cpa.g.sc126.10 Carica papaya HOM05D002027 ORTHO05D007928 4.5e-100 369.0 391 52.9
Atru.chr7.1835 Acer truncatum HOM05D002027 ORTHO05D007928 2.3e-99 366.7 439 49.9
Nitab4.5_0006220g0040 Nicotiana tabacum HOM05D002027 ORTHO05D007928 2.3e-99 366.7 440 47.3
Nitab4.5_0001576g0010 Nicotiana tabacum HOM05D002027 ORTHO05D007928 3.9e-99 365.9 440 48.2
Oeu024212.1 Olea europaea HOM05D002027 ORTHO05D007928 5.0e-99 365.5 440 48.0
Gohir.A07G019100 Gossypium hirsutum HOM05D002027 ORTHO05D007928 2.5e-98 363.2 456 46.1
Ca_13117_v3 Cicer arietinum L. HOM05D002027 ORTHO05D007928 3.3e-98 362.8 439 47.8
TWI63G1127 Tripterygium wilfordii HOM05D002027 ORTHO05D007928 4.3e-98 362.5 392 51.8
Oeu024211.1 Olea europaea HOM05D002027 ORTHO05D007928 7.3e-98 361.7 440 47.7
MSTRG.11630 Avicennia marina HOM05D002027 ORTHO05D007928 9.5e-98 361.3 442 47.3
Cc08_g01050 Coffea canephora HOM05D002027 ORTHO05D007928 2.1e-97 360.1 432 47.5
THA.LOC104803709 Tarenaya hassleriana HOM05D002027 ORTHO05D007928 3.6e-97 359.4 437 49.7
Peaxi162Scf00486g00315 Petunia axillaris HOM05D002027 ORTHO05D007928 1.8e-96 357.1 432 47.7
PGR004G1932 Punica granatum HOM05D002027 ORTHO05D007928 4.0e-96 355.9 440 46.1
PGSC0003DMG400024394 Solanum tuberosum HOM05D002027 ORTHO05D007928 1.2e-95 354.4 440 46.8
Gorai.001G019600 Gossypium raimondii HOM05D002027 ORTHO05D007928 9.8e-95 351.3 455 45.1
DCAR_003721 Daucus carota HOM05D002027 ORTHO05D007928 2.9e-94 349.7 436 46.6
SGA_v2.0_scaffold20G09151 Striga asiatica HOM05D002027 ORTHO05D007928 8.3e-94 348.2 426 46.5
Sopen08g016820 Solanum pennellii HOM05D002027 ORTHO05D007928 1.9e-93 347.1 445 46.7
MBI19_g44268_MAGBIO Magnolia biondii HOM05D002027 ORTHO05D007928 5.4e-93 345.5 451 43.7
Oeu022307.1 Olea europaea HOM05D002027 ORTHO05D007928 1.2e-92 344.4 440 46.8
Solyc08g061480.3 Solanum lycopersicum HOM05D002027 ORTHO05D007928 1.2e-92 344.4 445 46.3
Migut.A00065 Erythranthe guttata HOM05D002027 ORTHO05D007928 4.6e-92 342.4 437 46.9
SalBow4G1403 Salvia bowleyana HOM05D002027 ORTHO05D007928 2.5e-90 336.7 451 44.6
Lalb_Chr14g0366421 Lupinus albus HOM05D002027 ORTHO05D007928 5.6e-90 335.5 441 46.5
Ah.12g061280 Amaranthus hybridus HOM05D002027 ORTHO05D007928 7.3e-90 335.1 403 48.1
Aqoxy7G01035 Aquilegia oxysepala HOM05D002027 ORTHO05D007928 3.4e-87 326.2 437 43.5
COL.COLO4_21153 Corchorus olitorius HOM05D002027 ORTHO05D007928 9.8e-87 324.7 361 50.1
Lj5g0014128 Lotus japonicus HOM05D002027 ORTHO05D007928 9.8e-87 324.7 439 44.4
Psat6g021720 Pisum sativum HOM05D002027 ORTHO05D007928 1.2e-84 317.8 435 43.4
AUR62037722 Chenopodium quinoa HOM05D002027 ORTHO05D007928 2.7e-84 316.6 433 44.8
Sc06g0000160 Simmondsia chinensis HOM05D002027 ORTHO05D007928 1.7e-83 313.9 416 46.6
VMungo0647G0809 Vigna mungo HOM05D002027 ORTHO05D007928 2.3e-83 313.5 435 43.9
Glyma.14G098100 Glycine max HOM05D002027 ORTHO05D007928 3.9e-83 312.8 435 44.4
Medtr1g015700 Medicago truncatula HOM05D002027 ORTHO05D007928 5.1e-83 312.4 435 44.4
EL10Ac2g02409 Beta vulgaris HOM05D002027 ORTHO05D007928 6.6e-83 312.0 452 42.9
Glyma.17G226600 Glycine max HOM05D002027 ORTHO05D007928 8.6e-83 311.6 436 45.0
PSO724G0582 Papaver somniferum HOM05D002027 ORTHO05D007928 1.5e-82 310.8 442 42.5
Phvul.001G037700 Phaseolus vulgaris HOM05D002027 ORTHO05D007928 5.6e-82 308.9 437 44.6
TAR383G0615 Trochodendron aralioides HOM05D002027 ORTHO05D007928 1.2e-81 307.8 294 55.8
Dinv41850 Davidia involucrata HOM05D000120 ORTHO05D000068 3.6e-81 306.2 277 58.5
arahy.Tifrunner.gnm1.ann1.82L1EP Arachis hypogaea HOM05D002027 ORTHO05D007928 1.8e-80 303.9 451 42.6
arahy.Tifrunner.gnm1.ann1.AYFT4X Arachis hypogaea HOM05D002027 ORTHO05D007928 3.1e-80 303.1 451 42.4
AUR62020283 Chenopodium quinoa HOM05D002027 ORTHO05D007928 4.0e-80 302.8 434 43.5
PSO135G0370 Papaver somniferum HOM05D002027 ORTHO05D007928 8.9e-80 301.6 442 42.3
TAR624G0349 Trochodendron aralioides HOM05D000120 ORTHO05D007928 7.6e-79 298.5 314 53.2
DCAR_001241 Daucus carota HOM05D002027 ORTHO05D007928 9.9e-79 298.1 428 42.5
Gohir.D07G018900 Gossypium hirsutum HOM05D002027 ORTHO05D007928 1.2e-76 291.2 361 46.3
vmacro12513 Vaccinium macrocarpon HOM05D002027 ORTHO05D007928 1.2e-76 291.2 510 37.6
HanXRQChr10g0309891 Helianthus annuus HOM05D002027 ORTHO05D007928 1.7e-75 287.3 432 42.4
HPP92_009227 Vanilla planifolia HOM05D002027 ORTHO05D007928 1.1e-74 284.6 413 43.3
Lj7A212G30 Lonicera japonica HOM05D002027 ORTHO05D007928 2.5e-74 283.5 674 32.0
ATR0598G318 Amborella trichopoda HOM05D002027 ORTHO05D007928 3.4e-71 273.1 421 41.6
AT2G26310 Arabidopsis thaliana HOM05D002027 ORTHO05D007928 5.8e-71 272.3 410 41.5
AL4G18930 Arabidopsis lyrata HOM05D002027 ORTHO05D007928 3.8e-70 269.6 406 42.6
Os02g0778500 Oryza sativa ssp. japonica HOM05D002027 ORTHO05D007928 7.1e-69 265.4 442 38.2
Sp4g06660 Schrenkiella parvula HOM05D002027 ORTHO05D007928 2.7e-68 263.5 410 41.5
Carub.0004s0620 Capsella rubella HOM05D002027 ORTHO05D007928 3.5e-68 263.1 403 42.2
Aa31LG5G9500 Aethionema arabicum HOM05D002027 ORTHO05D007016 2.3e-67 260.4 291 48.8
CARHR115240 Cardamine hirsuta HOM05D002027 ORTHO05D007928 1.3e-65 254.6 389 41.9
Lsat_1_v5_gn_5_79360 Lactuca sativa HOM05D002027 ORTHO05D007928 1.3e-65 254.6 320 47.5
Zm00001eb256920 Zea mays HOM05D002027 ORTHO05D007928 1.1e-64 251.5 445 38.2
A04p20340 Brassica napus HOM05D002027 ORTHO05D007928 2.6e-63 246.9 397 42.1
BolC4t27137H Brassica oleracea HOM05D002027 ORTHO05D007928 2.6e-63 246.9 392 41.3
BraA04t17613Z Brassica rapa HOM05D002027 ORTHO05D007928 2.6e-63 246.9 393 42.0
BcaC02g08291 Brassica carinata HOM05D002027 ORTHO05D007928 3.4e-63 246.5 392 41.3
C04p56040 Brassica napus HOM05D002027 ORTHO05D007928 3.4e-63 246.5 392 41.3
TPR.G13059 Trifolium pratense HOM05D002027 ORTHO05D007928 2.2e-62 243.8 269 49.4
ECA234G4199 Erigeron canadensis HOM05D002027 ORTHO05D007928 7.1e-61 238.8 308 46.1
CSS0048827 Camellia sinensis var. sinensis HOM05D002027 ORTHO05D007928 1.2e-60 238.0 252 48.0
Thhalv10001976m.g Eutrema salsugineum HOM05D002027 ORTHO05D007928 6.6e-59 232.3 446 36.3
BcaB06g28094 Brassica carinata HOM05D002027 ORTHO05D007928 1.4e-56 224.6 420 38.1
Eucgr.C00737 Eucalyptus grandis HOM05D002027 ORTHO05D007928 2.6e-55 220.3 207 56.5
Os06g0203600 Oryza sativa ssp. japonica HOM05D002027 ORTHO05D007928 3.4e-55 219.9 416 37.5
CDE07G0566 Ceratophyllum demersum HOM05D002027 ORTHO05D002544 3.5e-52 209.9 276 45.7
MBI19_g43890_MAGBIO Magnolia biondii HOM05D002027 ORTHO05D007928 4.6e-52 209.5 261 44.1
Zm00001eb373710 Zea mays HOM05D002027 ORTHO05D007928 4.5e-47 193.0 320 40.0
Zm00001eb193130 Zea mays HOM05D002027 ORTHO05D007928 2.9e-46 190.3 235 47.2
unitig_748.g7540 Utricularia gibba HOM05D002027 ORTHO05D007928 4.2e-45 186.4 393 34.1
CAN.G56.2 Capsicum annuum HOM05D002027 ORTHO05D007928 1.0e-38 165.2 257 41.2
CSS0036822 Camellia sinensis var. sinensis HOM05D002027 ORTHO05D007928 1.8e-32 144.4 102 68.6
Pp3c21_9340 Physcomitrium patens HOM05D002027 ORTHO05D007928 8.8e-27 125.6 225 36.9
Mapoly0058s0114 Marchantia polymorpha HOM05D002027 ORTHO05D007928 4.8e-25 119.8 384 28.4
CBR_g20428 Chara braunii HOM05D002027 ORTHO05D007928 3.2e-21 107.1 220 34.1
Pp3c11_25580 Physcomitrium patens HOM05D002027 ORTHO05D004229 1.8e-19 101.3 226 29.2
SMO200G0139 Selaginella moellendorffii HOM05D002027 ORTHO05D007928 2.8e-17 94.0 186 34.4
SEGI_03719 Sequoiadendron giganteum HOM05D002027 ORTHO05D007928 3.7e-17 93.6 176 38.6
AagrBONN_evm.TU.Sc2ySwM_228.2504 Anthoceros agrestis HOM05D002027 ORTHO05D004229 7.0e-16 89.4 209 30.6
SEGI_28474 Sequoiadendron giganteum HOM05D002027 ORTHO05D004229 1.2e-15 88.6 213 30.0
TPR.G22965 Trifolium pratense HOM05D002027 ORTHO05D007928 1.0e-14 85.5 195 33.8
Duzib150G1126 Durio zibethinus HOM05D002027 ORTHO05D007928 6.5e-14 82.8 138 37.7
MBI04_g29619_MAGBIO Magnolia biondii HOM05D002027 ORTHO05D004229 6.5e-14 82.8 219 26.9
Prupe.8G240100 Prunus persica HOM05D002027 ORTHO05D004229 3.2e-13 80.5 213 26.3
ATR0332G016 Amborella trichopoda HOM05D002027 ORTHO05D004229 2.1e-12 77.8 188 29.3
Aa31LG10G17000 Aethionema arabicum HOM05D002027 ORTHO05D004229 8.0e-12 75.9 213 26.8
Zm00001eb142110 Zea mays HOM05D002027 ORTHO05D017138 3.3e-10 70.5 101 37.6
Zm00001eb233470 Zea mays HOM05D002027 ORTHO05D017138 3.3e-10 70.5 101 37.6
Zm00001eb372470 Zea mays HOM05D002027 ORTHO05D017138 3.3e-10 70.5 101 37.6
Lalb_Chr01g0020131 Lupinus albus HOM05D002027 ORTHO05D004229 9.7e-10 68.9 224 25.9
Lj7A215G11 Lonicera japonica HOM05D002027 ORTHO05D007928 1.3e-09 68.6 121 38.0
Os07g0571600 Oryza sativa ssp. japonica HOM05D002027 ORTHO05D004229 1.3e-09 68.6 184 26.6
Zm00001eb238700 Zea mays HOM05D002027 ORTHO05D017138 1.7e-09 68.2 72 47.2
TWI59G0219 Tripterygium wilfordii HOM05D002027 ORTHO05D004229 3.7e-09 67.0 213 25.4
Peaxi162Scf00783g00216 Petunia axillaris HOM05D002027 ORTHO05D004229 6.3e-09 66.2 202 27.2
THA.LOC104802230 Tarenaya hassleriana HOM05D002027 ORTHO05D004229 6.3e-09 66.2 216 24.1
COL.COLO4_09084 Corchorus olitorius HOM05D002027 ORTHO05D004229 1.4e-08 65.1 199 26.1
DCAR_002729 Daucus carota HOM05D002027 ORTHO05D004229 2.4e-08 64.3 199 27.1
SEGI_03941 Sequoiadendron giganteum HOM05D002027 ORTHO05D007928 7.0e-08 62.8 81 38.3


User provided reference genes

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