Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 1.9e-62 242.3 120 100.0
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 4.3e-62 241.1 120 99.2
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 1.6e-53 212.6 120 89.2
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 3.9e-47 191.4 120 80.8
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 2.0e-30 136.0 115 58.3
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 4.4e-30 134.8 114 57.0
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 8.2e-29 130.6 115 56.5
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 1.4e-28 129.8 116 56.0
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 1.8e-28 129.4 105 61.0
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 1.2e-27 126.7 115 55.7
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 3.5e-27 125.2 116 57.8
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 3.5e-27 125.2 115 54.8
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 5.9e-27 124.4 110 59.1
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 7.7e-27 124.0 108 60.2
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 1.3e-26 123.2 107 58.9
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 2.2e-26 122.5 115 54.8
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 2.9e-26 122.1 104 57.7
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 8.5e-26 120.6 109 56.0
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 3.2e-25 118.6 112 54.5
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 7.2e-25 117.5 104 58.7
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 9.4e-25 117.1 104 58.7
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 2.1e-24 115.9 109 56.9
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 3.6e-24 115.2 105 57.1
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 4.7e-24 114.8 102 55.9
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 4.7e-24 114.8 102 55.9
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 8.0e-24 114.0 115 53.9
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 1.0e-23 113.6 102 59.8
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.0e-23 113.6 102 59.8
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.0e-23 113.6 102 59.8
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 1.8e-23 112.8 102 58.8
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 2.3e-23 112.5 110 54.5
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 2.3e-23 112.5 106 56.6
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 3.0e-23 112.1 106 55.7
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 4.0e-23 111.7 109 55.0
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 5.2e-23 111.3 100 59.0
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 5.2e-23 111.3 108 53.7
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 6.7e-23 110.9 101 54.5
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 8.8e-23 110.5 114 53.5
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 8.8e-23 110.5 102 56.9
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 1.2e-22 110.2 101 59.4
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 1.5e-22 109.8 101 54.5
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 2.0e-22 109.4 102 56.9
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 2.6e-22 109.0 106 53.8
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 2.6e-22 109.0 108 54.6
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 3.3e-22 108.6 110 53.6
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 9.7e-22 107.1 110 53.6
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 1.7e-21 106.3 109 53.2
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 2.2e-21 105.9 99 52.5
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 2.8e-21 105.5 103 54.4
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 3.7e-21 105.1 113 50.4
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 4.8e-21 104.8 110 51.8
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.1e-20 103.6 110 54.5
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 1.4e-20 103.2 110 51.8
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 1.4e-20 103.2 102 55.9
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 2.4e-20 102.4 93 57.0
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 2.4e-20 102.4 102 51.0
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 3.1e-20 102.1 100 51.0
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 7.0e-20 100.9 111 47.7
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 1.6e-19 99.8 110 46.4
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 1.6e-19 99.8 112 48.2
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 2.7e-19 99.0 107 50.5
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 3.5e-19 98.6 107 53.3
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 3.5e-19 98.6 104 50.0
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 3.5e-19 98.6 96 56.2
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 5.9e-19 97.8 105 53.3
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 5.9e-19 97.8 116 52.6
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 7.7e-19 97.4 107 50.5
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 1.0e-18 97.1 100 52.0
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 2.9e-18 95.5 105 53.3
Sed0007062 Sechium edule HOM05D007692 ORTHO05D009696 8.5e-18 94.0 55 80.0
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 1.5e-17 93.2 102 51.0
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 1.5e-17 93.2 102 51.0
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 1.5e-17 93.2 102 51.0
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 1.5e-17 93.2 102 51.0
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 1.9e-17 92.8 113 48.7
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 1.9e-17 92.8 102 50.0
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.4e-17 90.5 105 48.6
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 1.6e-16 89.7 89 51.7
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 2.7e-16 89.0 103 47.6
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 3.6e-16 88.6 105 46.7
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 8.0e-16 87.4 102 44.1
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 1.0e-15 87.0 104 49.0
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 1.8e-15 86.3 108 46.3
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 8.8e-15 84.0 112 44.6
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 5.7e-14 81.3 85 49.4
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 5.7e-14 81.3 102 44.1
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 7.5e-14 80.9 113 43.4
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 1.7e-13 79.7 103 45.6
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 2.8e-13 79.0 113 42.5
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 1.1e-12 77.0 101 43.6
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 1.8e-12 76.3 110 41.8
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 3.5e-11 72.0 143 35.0
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 4.5e-11 71.6 112 40.2
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 1.0e-10 70.5 111 45.9
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 2.3e-10 69.3 66 56.1
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 1.5e-09 66.6 70 51.4
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 1.9e-09 66.2 71 50.7
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 6.1e-08 61.2 72 45.8
BcaB01g04756 Brassica carinata HOM05D007692 ORTHO05D009696 7.5e-06 54.3 41 56.1


User provided reference genes

Program Settings