Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.4e-268 929.1 473 100.0
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 7.5e-251 870.2 473 94.1
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 1.5e-230 802.7 474 86.9
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.3e-170 603.6 472 69.9
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 4.7e-128 462.2 468 57.7
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 6.8e-127 458.4 471 57.1
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 3.4e-126 456.1 470 56.6
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 5.8e-126 455.3 479 55.7
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 9.8e-126 454.5 470 56.4
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 6.4e-125 451.8 466 55.6
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.1e-124 451.1 465 54.6
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.4e-124 449.9 405 62.0
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 5.4e-124 448.7 479 55.1
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 4.6e-123 445.7 465 54.6
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 6.0e-123 445.3 462 55.0
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 6.0e-123 445.3 472 55.5
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.3e-122 444.1 472 54.9
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.7e-122 443.7 471 56.1
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 3.0e-122 443.0 467 53.5
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.1e-119 434.5 465 54.0
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.4e-119 434.1 414 60.4
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 2.3e-119 433.3 424 58.3
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 2.6e-118 429.9 442 55.9
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.1e-116 424.5 416 56.7
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.9e-116 423.7 481 53.6
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 1.9e-116 423.7 464 52.4
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.4e-116 422.2 480 53.1
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.7e-115 419.9 411 56.9
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 3.5e-115 419.5 455 54.3
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 3.5e-115 419.5 484 53.1
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 4.6e-115 419.1 411 56.9
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 6.0e-115 418.7 480 52.9
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.0e-115 418.7 480 52.9
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.0e-115 418.7 480 52.9
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 7.8e-115 418.3 481 51.4
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.0e-114 417.9 411 56.7
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.3e-114 417.5 442 55.7
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.7e-114 417.2 480 53.1
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 1.5e-113 414.1 386 59.3
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 4.3e-113 412.5 483 52.4
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 5.6e-113 412.1 481 52.6
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 7.3e-113 411.8 447 55.5
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 9.5e-113 411.4 480 51.7
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.2e-112 411.0 480 50.8
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.6e-112 409.5 431 54.8
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.1e-111 406.4 440 54.1
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 6.8e-111 405.2 474 53.2
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.6e-110 403.3 482 50.8
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 4.9e-109 399.1 483 52.2
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 4.9e-109 399.1 493 49.7
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 6.4e-109 398.7 443 51.9
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 5.4e-108 395.6 429 52.4
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.7e-107 393.3 440 52.7
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 2.7e-107 393.3 474 52.3
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 3.5e-107 392.9 445 53.0
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 4.6e-107 392.5 476 52.3
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 7.8e-107 391.7 481 48.9
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.0e-106 391.3 422 53.3
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.0e-106 391.3 475 50.7
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 3.9e-106 389.4 474 50.6
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 5.1e-106 389.0 483 51.3
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 6.6e-106 388.7 487 50.5
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 8.6e-106 388.3 483 48.4
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.1e-105 387.9 434 53.9
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 4.3e-105 386.0 429 56.2
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 9.5e-105 384.8 478 48.7
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 3.6e-104 382.9 475 49.9
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 4.7e-104 382.5 486 49.0
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 1.1e-103 381.3 460 49.6
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.4e-103 380.9 481 49.1
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 8.9e-103 378.3 405 53.6
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-102 377.9 463 49.2
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 2.9e-101 373.2 489 48.7
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 2.9e-101 373.2 434 52.3
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 3.8e-101 372.9 433 51.0
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.4e-100 370.9 400 52.0
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 7.8e-99 365.2 490 47.1
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.0e-98 364.8 432 51.2
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 2.3e-98 363.6 396 53.5
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 2.3e-98 363.6 440 50.9
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 3.9e-98 362.8 447 50.3
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.1e-97 361.3 477 46.3
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 4.3e-97 359.4 475 46.5
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 5.6e-97 359.0 396 53.5
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 3.6e-96 356.3 424 49.5
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 6.2e-96 355.5 335 59.7
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 1.1e-95 354.8 425 48.9
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 2.4e-95 353.6 487 50.5
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 4.2e-92 342.8 396 50.0
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.2e-91 341.3 436 47.2
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.1e-91 340.5 484 45.2
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 7.8e-91 338.6 474 46.8
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 8.7e-90 335.1 446 48.2
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.5e-89 334.3 405 48.4
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.9e-89 334.0 448 46.7
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 7.3e-89 332.0 345 55.1
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.4e-87 327.8 433 44.8
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.4e-87 327.8 357 53.2
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 6.9e-87 325.5 398 47.7
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.5e-86 324.3 418 47.6
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.2e-83 314.7 409 46.5
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 2.1e-80 303.9 384 50.8
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 8.1e-80 302.0 497 42.9
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 2.0e-78 297.4 497 41.2
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.3e-77 294.7 400 49.2
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 4.2e-76 289.7 493 38.9
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 1.0e-74 285.0 489 40.7
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 2.3e-74 283.9 505 41.2
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.1e-73 281.6 417 42.9
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 1.6e-72 277.7 399 42.4
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 2.1e-72 277.3 433 43.0
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 2.1e-72 277.3 479 41.5
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.8e-72 276.2 297 52.2
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 2.0e-70 270.8 474 39.9
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 3.4e-70 270.0 443 40.6
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 5.8e-70 269.2 443 40.6
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 4.9e-69 266.2 407 44.0
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 8.4e-69 265.4 459 39.7
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 1.1e-68 265.0 201 67.7
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.6e-67 261.2 202 65.8
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 2.1e-67 260.8 349 45.0
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 7.9e-67 258.8 454 39.2
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 5.1e-66 256.1 443 39.3
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 5.7e-65 252.7 438 40.2
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 9.7e-65 251.9 223 59.2
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.2e-64 250.8 465 39.4
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.4e-63 247.3 465 38.9
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 3.1e-63 246.9 434 38.7
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.0e-58 231.9 419 38.7
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.5e-57 228.0 415 38.1
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.1e-55 219.9 420 38.8
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 5.9e-54 216.1 202 57.4
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.5e-53 212.6 364 39.3
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 1.4e-52 211.5 436 34.4
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 7.9e-51 205.7 468 34.2
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 7.4e-49 199.1 423 34.5
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.7e-48 198.0 158 62.0
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.1e-44 185.3 477 34.6
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.5e-41 174.9 410 31.7
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 3.5e-38 163.7 148 56.1
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 3.5e-38 163.7 148 56.1
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 9.4e-36 155.6 264 42.0
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 9.4e-36 155.6 264 42.0
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.6e-35 154.8 166 50.6
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 3.6e-35 153.7 170 50.6
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 4.7e-35 153.3 111 64.0
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.8e-34 151.4 169 49.7
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 8.8e-34 149.1 388 32.0
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.5e-33 148.3 155 51.0
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 2.4e-31 141.0 169 43.8
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 7.7e-30 136.0 242 38.4
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.3e-29 135.2 321 35.5
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.3e-21 108.6 259 34.0
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 1.6e-14 85.1 102 46.1
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 1.0e-10 72.4 120 38.3
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.4e-09 67.4 110 32.7


User provided reference genes

Program Settings