Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016572.2 Cucumis melo HOM05D000013 ORTHO05D171454 1.3e-23 112.1 52 100.0
MELO3C016579.2 Cucumis melo HOM05D000013 ORTHO05D000011 5.9e-08 60.1 34 73.5
CsaV3_3G005830 Cucumis sativus L. HOM05D000013 ORTHO05D000011 5.9e-08 60.1 34 73.5
Sed0002166 Sechium edule HOM05D000013 ORTHO05D000011 1.0e-07 59.3 34 73.5
MELO3C016574.2 Cucumis melo HOM05D000013 ORTHO05D000011 5.0e-07 57.0 34 70.6
HanXRQChr17g0561241 Helianthus annuus HOM05D000013 ORTHO05D000011 5.0e-07 57.0 35 65.7
MELO3C016573.2 Cucumis melo HOM05D000013 ORTHO05D000011 1.1e-06 55.8 34 67.6
CiPaw.03G147100 Carya illinoinensis HOM05D000013 ORTHO05D000011 1.5e-06 55.5 35 62.9
HanXRQChr00c0377g0574261 Helianthus annuus HOM05D000013 ORTHO05D000011 1.5e-06 55.5 35 62.9
HanXRQChr00c0377g0574281 Helianthus annuus HOM05D000013 ORTHO05D000011 1.5e-06 55.5 35 62.9
HanXRQChr14g0456981 Helianthus annuus HOM05D000013 ORTHO05D000011 1.5e-06 55.5 35 62.9
HanXRQChr14g0457031 Helianthus annuus HOM05D000013 ORTHO05D000011 1.5e-06 55.5 35 62.9
DCAR_008098 Daucus carota HOM05D000013 ORTHO05D000011 1.9e-06 55.1 34 61.8
Nitab4.5_0001494g0150 Nicotiana tabacum HOM05D000013 ORTHO05D286160 1.9e-06 55.1 35 60.0
arahy.Tifrunner.gnm1.ann1.98Q0CB Arachis hypogaea HOM05D000013 ORTHO05D000011 2.5e-06 54.7 34 64.7
FvH4_3g15690 Fragaria vesca HOM05D000013 ORTHO05D000011 2.5e-06 54.7 50 52.0
HanXRQChr11g0332361 Helianthus annuus HOM05D000013 ORTHO05D000011 2.5e-06 54.7 34 61.8
Oeu055725.1 Olea europaea HOM05D000013 ORTHO05D000011 2.5e-06 54.7 35 62.9
MBI18_g35140_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 3.2e-06 54.3 35 65.7
HanXRQChr06g0177241 Helianthus annuus HOM05D000013 ORTHO05D000011 4.2e-06 53.9 35 60.0
HanXRQChr08g0218971 Helianthus annuus HOM05D000013 ORTHO05D000011 4.2e-06 53.9 34 64.7
Manes.15G080900 Manihot esculenta HOM05D000013 ORTHO05D000011 4.2e-06 53.9 35 60.0
Prupe.4G196200 Prunus persica HOM05D000013 ORTHO05D000011 4.2e-06 53.9 34 61.8
Sed0022588 Sechium edule HOM05D000013 ORTHO05D000011 4.2e-06 53.9 34 64.7
CSS0034133 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000011 5.5e-06 53.5 35 60.0
Cpa.g.sc12.3 Carica papaya HOM05D000013 ORTHO05D000011 5.5e-06 53.5 34 64.7
COL.COLO4_03299 Corchorus olitorius HOM05D000013 ORTHO05D000011 5.5e-06 53.5 35 62.9
Haze_09563 Corylus avellana HOM05D000013 ORTHO05D000011 5.5e-06 53.5 34 64.7
Haze_12942 Corylus avellana HOM05D000013 ORTHO05D015298 5.5e-06 53.5 35 57.1
Haze_24840 Corylus avellana HOM05D000013 ORTHO05D015298 5.5e-06 53.5 35 57.1
Haze_24841 Corylus avellana HOM05D000013 ORTHO05D015298 5.5e-06 53.5 35 57.1
CsaV3_3G005840 Cucumis sativus L. HOM05D000013 ORTHO05D000011 5.5e-06 53.5 34 64.7
Gohir.A01G070400 Gossypium hirsutum HOM05D000013 ORTHO05D000011 5.5e-06 53.5 35 57.1
Gohir.D01G057800 Gossypium hirsutum HOM05D000013 ORTHO05D000011 5.5e-06 53.5 35 57.1
Nitab4.5_0002531g0020 Nicotiana tabacum HOM05D000022 ORTHO05D000071 5.5e-06 53.5 34 58.8
Nitab4.5_0003282g0020 Nicotiana tabacum HOM05D000022 ORTHO05D000071 5.5e-06 53.5 34 58.8
PGSC0003DMG401013876 Solanum tuberosum HOM05D000013 ORTHO05D000011 5.5e-06 53.5 34 61.8
GSVIVG01014484001 Vitis vinifera HOM05D000013 ORTHO05D000011 5.5e-06 53.5 35 60.0
Zm00001eb131710 Zea mays HOM05D000013 ORTHO05D000011 5.5e-06 53.5 35 62.9
Dinv17867 Davidia involucrata HOM05D000013 ORTHO05D000011 7.2e-06 53.1 34 61.8
Lsat_1_v5_gn_2_113261 Lactuca sativa HOM05D000013 ORTHO05D000011 7.2e-06 53.1 35 62.9
Oeu061257.1 Olea europaea HOM05D000013 ORTHO05D000011 7.2e-06 53.1 35 62.9
Potri.001G413700 Populus trichocarpa HOM05D000013 ORTHO05D000011 7.2e-06 53.1 35 60.0
Solyc02g079710.4 Solanum lycopersicum HOM05D000013 ORTHO05D000011 7.2e-06 53.1 34 58.8
Sopen02g024470 Solanum pennellii HOM05D000013 ORTHO05D000011 7.2e-06 53.1 34 58.8
CiPaw.03G147300 Carya illinoinensis HOM05D000013 ORTHO05D000011 9.5e-06 52.8 35 60.0
Duzib213G0153 Durio zibethinus HOM05D000013 ORTHO05D000011 9.5e-06 52.8 35 60.0
Glyma.13G283000 Glycine max HOM05D000013 ORTHO05D000011 9.5e-06 52.8 34 58.8
Gohir.A04G024066 Gossypium hirsutum HOM05D000013 ORTHO05D000011 9.5e-06 52.8 35 57.1
HanXRQChr14g0456961 Helianthus annuus HOM05D000013 ORTHO05D000011 9.5e-06 52.8 35 62.9
Medtr8g442340 Medicago truncatula HOM05D000013 ORTHO05D000011 9.5e-06 52.8 35 60.0
Nitab4.5_0001223g0160 Nicotiana tabacum HOM05D000013 ORTHO05D000011 9.5e-06 52.8 34 58.8
Nitab4.5_0002907g0010 Nicotiana tabacum HOM05D000013 ORTHO05D000011 9.5e-06 52.8 34 58.8
Os07g0535800 Oryza sativa ssp. japonica HOM05D000022 ORTHO05D000071 9.5e-06 52.8 35 60.0
Phvul.011G150400 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 9.5e-06 52.8 34 58.8
Potri.011G125601 Populus trichocarpa HOM05D000013 ORTHO05D000011 9.5e-06 52.8 35 60.0
QL09p054029 Quercus lobata HOM05D000013 ORTHO05D000011 9.5e-06 52.8 34 64.7
RcHm_v2.0_Chr5g0036371 Rosa chinensis HOM05D000013 ORTHO05D000011 9.5e-06 52.8 35 57.1
Thecc.07G101500 Theobroma cacao HOM05D000013 ORTHO05D000011 9.5e-06 52.8 35 57.1
Thecc.07G101900 Theobroma cacao HOM05D000013 ORTHO05D000011 9.5e-06 52.8 35 57.1
Thecc.07G102100 Theobroma cacao HOM05D000013 ORTHO05D000011 9.5e-06 52.8 35 57.1
GSVIVG01034406001 Vitis vinifera HOM05D000013 ORTHO05D000011 9.5e-06 52.8 34 61.8


User provided reference genes

Program Settings