Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016544.2 Cucumis melo HOM05D003865 ORTHO05D004466 4.9e-34 147.1 69 100.0
CsaV3_3G006060 Cucumis sativus L. HOM05D003865 ORTHO05D004466 6.8e-28 126.7 62 91.9
Sed0025956 Sechium edule HOM05D003865 ORTHO05D004466 4.4e-27 124.0 67 82.1
AT3G15534 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 7.1e-25 116.7 69 73.9
CiPaw.11G174800 Carya illinoinensis HOM05D003865 ORTHO05D004466 7.1e-25 116.7 69 75.4
Eucgr.F01087 Eucalyptus grandis HOM05D003865 ORTHO05D004466 1.2e-24 115.9 69 72.5
Hma1.2p1_1143F.1_g261110 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 1.2e-24 115.9 69 73.9
BcaB06g29589 Brassica carinata HOM05D003865 ORTHO05D004466 1.6e-24 115.5 69 71.0
Prupe.4G187900 Prunus persica HOM05D003865 ORTHO05D004466 1.6e-24 115.5 69 72.5
HanXRQChr08g0235631 Helianthus annuus HOM05D003865 ORTHO05D004466 2.7e-24 114.8 69 75.4
Hma1.2p1_1143F.1_g261120 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 3.5e-24 114.4 69 72.5
Cc05_g12570 Coffea canephora HOM05D003865 ORTHO05D004466 4.6e-24 114.0 69 75.4
BraA01t03904Z Brassica rapa HOM05D003865 ORTHO05D004466 6.0e-24 113.6 69 68.1
Sopen07g031650 Solanum pennellii HOM05D003865 ORTHO05D004466 6.0e-24 113.6 69 71.0
BcaB04g20919 Brassica carinata HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 69.6
BcaB07g33385 Brassica carinata HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 68.1
A05p33870 Brassica napus HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 69.6
A06p01500 Brassica napus HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 68.1
BolC6t35932H Brassica oleracea HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 68.1
BraA06t23371Z Brassica rapa HOM05D003865 ORTHO05D004466 7.8e-24 113.2 69 68.1
BcaC08g43469 Brassica carinata HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 68.1
C06p08510 Brassica napus HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 68.1
BcaC05g28963 Brassica carinata HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 68.1
BcaC09g48519 Brassica carinata HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 66.7
C05p51570 Brassica napus HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 68.1
BolC5t33845H Brassica oleracea HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 68.1
Ciclev10010786m.g Citrus clementina HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 72.5
TWI39G0307 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 1.3e-23 112.5 67 71.6
CiPaw.04G123400 Carya illinoinensis HOM05D003865 ORTHO05D004466 1.7e-23 112.1 69 69.6
Solyc07g063470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 1.7e-23 112.1 69 69.6
THA.LOC109116854 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 1.7e-23 112.1 69 69.6
CARHR043080 Cardamine hirsuta HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 68.1
Glyma.12G220500 Glycine max HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 71.0
Phvul.005G085500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 72.5
Thhalv10012262m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 3.9e-23 110.9 69 66.7
MD11G1238900 Malus domestica HOM05D003865 ORTHO05D004466 3.9e-23 110.9 69 71.0
C01p48910 Brassica napus HOM05D003865 ORTHO05D004466 5.1e-23 110.5 69 65.2
BolC1t04854H Brassica oleracea HOM05D003865 ORTHO05D004466 5.1e-23 110.5 69 65.2
Potri.011G124800 Populus trichocarpa HOM05D003865 ORTHO05D004466 5.1e-23 110.5 69 69.6
Carub.0001s4201 Capsella rubella HOM05D003865 ORTHO05D004466 6.6e-23 110.2 69 68.1
CSS0037327 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 8.6e-23 109.8 69 66.7
CARHR090600 Cardamine hirsuta HOM05D003865 ORTHO05D004466 8.6e-23 109.8 69 68.1
Thhalv10021922m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 68.1
Lj3g0025843 Lotus japonicus HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 69.6
Manes.15G084300 Manihot esculenta HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 69.6
CSS0011087 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.5e-22 109.0 67 68.7
CSS0044246 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.5e-22 109.0 67 68.7
RcHm_v2.0_Chr5g0035051 Rosa chinensis HOM05D003865 ORTHO05D004466 1.5e-22 109.0 69 66.7
PGSC0003DMG400019299 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.5e-22 109.0 69 68.1
unitig_0.g2049 Utricularia gibba HOM05D003865 ORTHO05D004466 1.5e-22 109.0 68 70.6
CANSAT11G1994 Cannabis sativa HOM05D003865 ORTHO05D004466 1.9e-22 108.6 69 66.7
MD03G1221400 Malus domestica HOM05D003865 ORTHO05D004466 1.9e-22 108.6 69 69.6
AT1G52855 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 3.3e-22 107.8 69 66.7
CANSAT64G1248 Cannabis sativa HOM05D003865 ORTHO05D004466 3.3e-22 107.8 69 68.1
Psat2g056680 Pisum sativum HOM05D003865 ORTHO05D004466 3.3e-22 107.8 69 69.6
Glyma.06G249600 Glycine max HOM05D003865 ORTHO05D004466 4.3e-22 107.5 69 68.1
PGR083G1332 Punica granatum HOM05D003865 ORTHO05D004466 4.3e-22 107.5 69 68.1
PGSC0003DMG400025047 Solanum tuberosum HOM05D003865 ORTHO05D004466 4.3e-22 107.5 67 68.7
HanXRQChr05g0156551 Helianthus annuus HOM05D003865 ORTHO05D004466 5.6e-22 107.1 69 72.5
HanXRQChr17g0554211 Helianthus annuus HOM05D003865 ORTHO05D004466 5.6e-22 107.1 69 66.7
Lsat_1_v5_gn_5_7081 Lactuca sativa HOM05D003865 ORTHO05D004466 5.6e-22 107.1 69 68.1
Thecc.07G074300 Theobroma cacao HOM05D003865 ORTHO05D004466 5.6e-22 107.1 69 66.7
Lalb_Chr19g0134391 Lupinus albus HOM05D003865 ORTHO05D004466 7.3e-22 106.7 69 66.7
COL.COLO4_09463 Corchorus olitorius HOM05D003865 ORTHO05D004466 9.6e-22 106.3 69 66.7
Migut.H01032 Erythranthe guttata HOM05D003865 ORTHO05D004466 9.6e-22 106.3 69 65.2
Carub.0003s1527 Capsella rubella HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 65.2
Glyma.12G148300 Glycine max HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 66.7
Glyma.13G281000 Glycine max HOM05D003865 ORTHO05D004466 1.2e-21 105.9 69 69.6
Gorai.009G432200 Gossypium raimondii HOM05D003865 ORTHO05D004466 1.6e-21 105.5 69 68.1
TPR.G32874 Trifolium pratense HOM05D003865 ORTHO05D004466 1.6e-21 105.5 69 65.2
EL10Ac9g20679 Beta vulgaris HOM05D003865 ORTHO05D004466 2.1e-21 105.1 69 62.3
Hma1.2p1_0213F.1_g090470 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 2.1e-21 105.1 69 63.8
Potri.013G145100 Populus trichocarpa HOM05D003865 ORTHO05D004466 2.1e-21 105.1 69 66.7
Cc00_g29860 Coffea canephora HOM05D003865 ORTHO05D004466 2.8e-21 104.8 69 63.8
Duzib268G1549 Durio zibethinus HOM05D003865 ORTHO05D004466 2.8e-21 104.8 69 63.8
Migut.M00867 Erythranthe guttata HOM05D003865 ORTHO05D004466 2.8e-21 104.8 67 68.7
HanXRQChr05g0156511 Helianthus annuus HOM05D003865 ORTHO05D004466 2.8e-21 104.8 69 71.0
Hma1.2p1_1053F.1_g252410 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 2.8e-21 104.8 69 68.1
Phvul.011G148500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 2.8e-21 104.8 67 65.7
Sc06g0009210 Simmondsia chinensis HOM05D003865 ORTHO05D004466 2.8e-21 104.8 69 63.8
Ciclev10017406m.g Citrus clementina HOM05D003865 ORTHO05D004466 3.6e-21 104.4 69 65.2
VMungo1127G2113 Vigna mungo HOM05D003865 ORTHO05D004466 3.6e-21 104.4 67 65.7
CsaV3_7G004170 Cucumis sativus L. HOM05D003865 ORTHO05D004466 4.7e-21 104.0 69 63.8
Duzib248G0431 Durio zibethinus HOM05D003865 ORTHO05D004466 4.7e-21 104.0 69 65.2
Manes.03G115200 Manihot esculenta HOM05D003865 ORTHO05D004466 4.7e-21 104.0 69 65.2
Potri.019G104100 Populus trichocarpa HOM05D003865 ORTHO05D004466 4.7e-21 104.0 69 65.2
Potri.019G104300 Populus trichocarpa HOM05D003865 ORTHO05D004466 4.7e-21 104.0 69 65.2
Prupe.3G233100 Prunus persica HOM05D003865 ORTHO05D004466 4.7e-21 104.0 69 65.2
Sed0016537 Sechium edule HOM05D003865 ORTHO05D004466 4.7e-21 104.0 69 62.3
Solyc07g054470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 4.7e-21 104.0 69 63.8
Duzib170G0518 Durio zibethinus HOM05D003865 ORTHO05D004466 6.2e-21 103.6 69 65.2
Gohir.A01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 6.2e-21 103.6 69 66.7
Gohir.D02G182200 Gossypium hirsutum HOM05D003865 ORTHO05D004466 6.2e-21 103.6 69 65.2
Gorai.005G204700 Gossypium raimondii HOM05D003865 ORTHO05D004466 6.2e-21 103.6 69 65.2
QL08p037564 Quercus lobata HOM05D003865 ORTHO05D004466 6.2e-21 103.6 68 66.2
Cfa020526 Carpinus fangiana HOM05D003865 ORTHO05D004466 8.1e-21 103.2 67 65.7
Lsat_1_v5_gn_8_131501 Lactuca sativa HOM05D003865 ORTHO05D004466 8.1e-21 103.2 69 63.8
MBI18_g32892_MAGBIO Magnolia biondii HOM05D003865 ORTHO05D004466 8.1e-21 103.2 69 66.7
TWI18G0639 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 8.1e-21 103.2 67 61.2
Gohir.D01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.1e-20 102.8 69 65.2
Gorai.002G017300 Gossypium raimondii HOM05D003865 ORTHO05D004466 1.1e-20 102.8 69 65.2
MD09G1091900 Malus domestica HOM05D003865 ORTHO05D004466 1.4e-20 102.4 69 65.2
Phvul.005G107201 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 1.4e-20 102.4 68 58.8
Sopen07g028410 Solanum pennellii HOM05D003865 ORTHO05D004466 1.4e-20 102.4 69 62.3
CSS0035059 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.8e-20 102.1 67 64.2
Duzib132G0908 Durio zibethinus HOM05D003865 ORTHO05D004466 1.8e-20 102.1 69 63.8
Lsat_1_v5_gn_8_131640 Lactuca sativa HOM05D003865 ORTHO05D004466 1.8e-20 102.1 67 64.2
Potri.001G405400 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.8e-20 102.1 69 66.7
Sed0011440 Sechium edule HOM05D003865 ORTHO05D004466 1.8e-20 102.1 69 59.4
ClCG02G017420 Citrullus lanatus HOM05D003865 ORTHO05D004466 2.4e-20 101.7 69 59.4
Nn1g03940 Nelumbo nucifera HOM05D003865 ORTHO05D004466 3.1e-20 101.3 69 66.7
Cfa014557 Carpinus fangiana HOM05D003865 ORTHO05D004466 4.0e-20 100.9 67 62.7
CiPaw.03G171100 Carya illinoinensis HOM05D003865 ORTHO05D004466 4.0e-20 100.9 69 63.8
HanXRQChr17g0559351 Helianthus annuus HOM05D003865 ORTHO05D004466 4.0e-20 100.9 69 62.3
Nn1g06711 Nelumbo nucifera HOM05D003865 ORTHO05D004466 4.0e-20 100.9 69 65.2
TWI36G0902 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 4.0e-20 100.9 69 62.3
ATR0191G001 Amborella trichopoda HOM05D003865 ORTHO05D004466 5.2e-20 100.5 69 63.8
CSS0016755 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 6.9e-20 100.1 69 59.4
MELO3C013523.2 Cucumis melo HOM05D003865 ORTHO05D004466 8.9e-20 99.8 69 59.4
HanXRQChr17g0559361 Helianthus annuus HOM05D003865 ORTHO05D004466 8.9e-20 99.8 69 60.9
Eucgr.K00940 Eucalyptus grandis HOM05D003865 ORTHO05D004466 1.2e-19 99.4 69 65.2
Lalb_Chr22g0356421 Lupinus albus HOM05D003865 ORTHO05D004466 1.2e-19 99.4 68 57.4
Carub.0003s3548 Capsella rubella HOM05D003865 ORTHO05D004466 1.5e-19 99.0 69 62.3
PGR142G1950 Punica granatum HOM05D003865 ORTHO05D004466 1.5e-19 99.0 69 62.3
PGSC0003DMG400018392 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.5e-19 99.0 69 59.4
AT2G20835 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 2.0e-19 98.6 69 62.3
CSS0031855 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 2.0e-19 98.6 69 58.0
Ca_01531_v3 Cicer arietinum L. HOM05D003865 ORTHO05D004466 3.4e-19 97.8 67 56.7
Glyma.12G201800 Glycine max HOM05D003865 ORTHO05D004466 3.4e-19 97.8 68 58.8
Os07g0564200 Oryza sativa ssp. japonica HOM05D003865 ORTHO05D004466 3.4e-19 97.8 69 63.8
Manes.12G087700 Manihot esculenta HOM05D003865 ORTHO05D004466 4.4e-19 97.4 67 59.7
TWI75G0545 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 4.4e-19 97.4 69 58.0
BcaC07g41193 Brassica carinata HOM05D003865 ORTHO05D004466 5.8e-19 97.1 69 60.9
C08p41990 Brassica napus HOM05D003865 ORTHO05D004466 5.8e-19 97.1 69 60.9
BolC8t51762H Brassica oleracea HOM05D003865 ORTHO05D004466 5.8e-19 97.1 69 60.9
Medtr2g090110 Medicago truncatula HOM05D003865 ORTHO05D004466 5.8e-19 97.1 67 59.7
AL3G54020 Arabidopsis lyrata HOM05D003865 ORTHO05D004466 7.6e-19 96.7 69 60.9
BcaB08g34942 Brassica carinata HOM05D003865 ORTHO05D004466 7.6e-19 96.7 69 60.9
BraA09t41256Z Brassica rapa HOM05D003865 ORTHO05D004466 7.6e-19 96.7 69 60.9
CARHR111560 Cardamine hirsuta HOM05D003865 ORTHO05D004466 7.6e-19 96.7 69 60.9
Glyma.13G300400 Glycine max HOM05D003865 ORTHO05D004466 7.6e-19 96.7 68 57.4
Sp3g34080 Schrenkiella parvula HOM05D003865 ORTHO05D004466 7.6e-19 96.7 69 60.9
TPR.G35550 Trifolium pratense HOM05D003865 ORTHO05D004466 7.6e-19 96.7 67 58.2
GSVIVG01030567001 Vitis vinifera HOM05D003865 ORTHO05D004466 7.6e-19 96.7 67 59.7
MD17G1081800 Malus domestica HOM05D003865 ORTHO05D004466 9.9e-19 96.3 69 62.3
BcaC06g36774 Brassica carinata HOM05D003865 ORTHO05D004466 1.7e-18 95.5 69 59.4
BolC7t40459H Brassica oleracea HOM05D003865 ORTHO05D004466 1.7e-18 95.5 69 59.4
Cpa.g.sc34.113 Carica papaya HOM05D003865 ORTHO05D004466 1.7e-18 95.5 67 59.7
THA.LOC109117138 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 1.7e-18 95.5 69 60.9
CSS0032128 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 2.2e-18 95.1 67 62.7
Migut.O00868 Erythranthe guttata HOM05D003865 ORTHO05D004466 2.2e-18 95.1 67 62.7
Aa31LG8G17640 Aethionema arabicum HOM05D003865 ORTHO05D004466 3.8e-18 94.4 69 59.4
BraA05t22209Z Brassica rapa HOM05D003865 ORTHO05D004466 3.8e-18 94.4 70 61.4
Thhalv10002196m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 3.8e-18 94.4 69 59.4
Gohir.A01G067400 Gossypium hirsutum HOM05D003865 ORTHO05D004466 3.8e-18 94.4 69 60.9
Gohir.D01G054600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 3.8e-18 94.4 69 60.9
Gorai.002G074500 Gossypium raimondii HOM05D003865 ORTHO05D004466 3.8e-18 94.4 69 60.9
RcHm_v2.0_Chr2g0162101 Rosa chinensis HOM05D003865 ORTHO05D004466 4.9e-18 94.0 67 62.7
EL10Ac4g08086 Beta vulgaris HOM05D003865 ORTHO05D004466 6.4e-18 93.6 67 61.2
Lsat_1_v5_gn_9_85200 Lactuca sativa HOM05D003865 ORTHO05D004466 1.9e-17 92.0 67 58.2
Sp1g39430 Schrenkiella parvula HOM05D003865 ORTHO05D004466 1.9e-17 92.0 60 63.3
Sc03g0009670 Simmondsia chinensis HOM05D003865 ORTHO05D004466 1.9e-17 92.0 69 59.4
Zm00001eb324400 Zea mays HOM05D003865 ORTHO05D004466 1.9e-17 92.0 69 60.9
unitig_899.g15557 Utricularia gibba HOM05D003865 ORTHO05D004466 4.2e-17 90.9 67 56.7
DCAR_009979 Daucus carota HOM05D003865 ORTHO05D004466 7.1e-17 90.1 66 63.6
A09p58700 Brassica napus HOM05D003865 ORTHO05D004466 3.0e-15 84.7 62 61.3
Gohir.A03G159100 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.5e-14 82.4 56 62.5
Manes.13G150400 Manihot esculenta HOM05D003865 ORTHO05D004466 7.3e-14 80.1 48 70.8
Peaxi162Scf00007g02826 Petunia axillaris HOM05D003865 ORTHO05D004466 1.6e-13 79.0 56 58.9
DCAR_013078 Daucus carota HOM05D003865 ORTHO05D004466 3.6e-13 77.8 50 70.0
GSVIVG01014413001 Vitis vinifera HOM05D003865 ORTHO05D004466 4.8e-13 77.4 43 76.7
Actinidia12448 Actinidia chinensis HOM05D003865 ORTHO05D004466 2.4e-12 75.1 57 54.4
FAN21G1589 Fragaria x ananassa HOM05D003865 ORTHO05D004466 4.0e-12 74.3 50 66.0
Oeu058398.1 Olea europaea HOM05D003865 ORTHO05D004466 6.4e-10 67.0 40 72.5
Gohir.D05G360466 Gossypium hirsutum HOM05D003865 ORTHO05D004466 5.4e-09 63.9 40 70.0
Mapoly0067s0090 Marchantia polymorpha HOM05D003865 ORTHO05D004466 4.6e-08 60.8 64 40.6
C07p00070 Brassica napus HOM05D028728 ORTHO05D033255 3.3e-06 54.7 39 56.4


User provided reference genes

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