Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 3.4e-141 505.0 255 100.0
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 8.4e-124 447.2 239 95.8
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 2.8e-111 405.6 242 82.2
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 3.7e-111 405.2 230 87.8
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 4.8e-111 404.8 238 84.0
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 4.8e-111 404.8 238 84.5
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 6.3e-111 404.4 234 84.6
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 6.3e-111 404.4 229 87.8
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 2.4e-110 402.5 238 84.5
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 5.3e-110 401.4 237 84.4
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 2.6e-109 399.1 234 83.8
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 5.9e-109 397.9 233 84.5
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 1.0e-108 397.1 230 85.7
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 1.0e-108 397.1 232 85.8
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 1.3e-108 396.7 232 84.9
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 3.8e-108 395.2 238 81.1
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 5.0e-108 394.8 233 83.3
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 1.4e-107 393.3 236 83.5
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 1.9e-107 392.9 231 83.1
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 2.5e-107 392.5 229 84.7
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 4.2e-107 391.7 234 83.3
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 5.5e-107 391.3 230 83.9
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 7.2e-107 391.0 227 84.6
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 7.2e-107 391.0 233 81.1
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 1.6e-106 389.8 232 83.6
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 2.1e-106 389.4 331 66.5
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 2.1e-106 389.4 255 76.1
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 2.1e-106 389.4 241 81.3
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 2.7e-106 389.0 229 82.1
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 4.7e-106 388.3 230 83.5
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 6.1e-106 387.9 230 83.5
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 7.9e-106 387.5 237 81.4
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 7.9e-106 387.5 231 83.1
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 7.9e-106 387.5 238 80.7
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.4e-105 386.7 230 83.5
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 1.8e-105 386.3 235 82.1
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 2.3e-105 386.0 228 83.8
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 3.0e-105 385.6 238 81.1
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 3.9e-105 385.2 227 83.7
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 6.7e-105 384.4 227 83.7
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 1.1e-104 383.6 229 82.5
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 1.1e-104 383.6 228 82.9
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 1.1e-104 383.6 228 82.9
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 1.5e-104 383.3 226 84.1
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 1.5e-104 383.3 228 82.0
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 3.3e-104 382.1 250 75.6
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 4.4e-104 381.7 226 83.2
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 7.4e-104 380.9 235 79.6
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 1.3e-103 380.2 230 81.3
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.3e-103 380.2 230 82.2
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 1.3e-103 380.2 227 82.8
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 2.2e-103 379.4 228 81.6
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 1.4e-102 376.7 231 79.2
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 5.3e-102 374.8 227 82.4
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 5.3e-102 374.8 236 77.5
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 7.0e-102 374.4 227 82.8
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 7.0e-102 374.4 230 81.7
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 1.5e-101 373.2 237 78.1
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 4.5e-101 371.7 237 78.9
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 1.7e-100 369.8 223 81.6
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 2.9e-100 369.0 207 87.0
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 3.8e-100 368.6 232 78.4
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 8.5e-100 367.5 229 79.9
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 4.2e-99 365.2 231 78.8
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 2.1e-98 362.8 233 76.0
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 2.1e-98 362.8 229 80.8
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 2.1e-98 362.8 207 86.5
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 6.1e-98 361.3 233 76.0
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 8.0e-98 360.9 231 76.2
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.0e-97 360.5 229 77.3
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 1.4e-97 360.1 231 76.6
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.4e-97 360.1 226 77.9
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 1.8e-97 359.8 233 76.0
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 2.3e-97 359.4 233 75.1
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 2.3e-97 359.4 231 76.6
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 2.3e-97 359.4 239 74.5
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 3.0e-97 359.0 233 75.5
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 3.9e-97 358.6 231 76.2
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 5.2e-97 358.2 233 75.1
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 8.8e-97 357.5 233 75.1
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 1.1e-96 357.1 233 74.7
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 7.4e-96 354.4 240 77.1
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 1.3e-95 353.6 215 80.0
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 2.2e-95 352.8 300 63.3
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 3.7e-95 352.1 232 77.6
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 2.4e-94 349.4 216 79.6
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 3.1e-94 349.0 215 80.0
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 4.1e-94 348.6 226 75.7
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 3.5e-93 345.5 226 74.8
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 2.2e-92 342.8 229 76.9
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 5.5e-91 338.2 235 72.8
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 5.5e-91 338.2 226 73.5
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 4.7e-90 335.1 232 74.1
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.0e-89 334.0 226 73.5
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.4e-89 333.6 230 72.6
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 8.8e-89 330.9 183 89.6
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 1.5e-88 330.1 226 72.6
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 7.5e-88 327.8 244 69.7
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 5.3e-86 321.6 193 80.8
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 2.0e-85 319.7 200 80.0
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 7.7e-85 317.8 227 74.0
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 3.6e-82 308.9 247 68.8
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 2.3e-81 306.2 184 83.2
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 1.3e-79 300.4 237 66.2
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 4.4e-72 275.4 228 64.5
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 7.5e-72 274.6 226 62.4
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 7.8e-69 264.6 207 68.6
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 1.0e-68 264.2 172 73.8
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 2.5e-67 259.6 224 59.4
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 2.6e-64 249.6 150 81.3
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 2.0e-61 240.0 153 79.1
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 2.7e-53 213.0 183 58.5
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 1.5e-51 207.2 171 64.3
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 1.3e-44 184.1 162 61.1
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 3.1e-41 172.9 168 57.7
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.1e-38 164.5 116 73.3
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 5.4e-38 162.2 151 56.3
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 4.6e-37 159.1 104 72.1
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 4.9e-31 139.0 260 42.7
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 6.0e-29 132.1 221 42.5
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 3.3e-27 126.3 154 47.4
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 2.0e-24 117.1 180 44.4
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 3.4e-24 116.3 144 50.0
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 8.4e-23 111.7 117 60.7
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 3.5e-21 106.3 66 74.2
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 1.3e-18 97.8 218 31.7
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 3.7e-18 96.3 238 29.8
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 2.0e-16 90.5 62 64.5
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 6.5e-15 85.5 55 70.9
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 3.2e-14 83.2 46 84.8
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 5.5e-14 82.4 87 57.5
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 2.6e-08 63.5 63 63.5


User provided reference genes

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