Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 1.6e-86 322.8 165 100.0
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 1.5e-81 306.2 165 96.4
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.5e-73 279.6 165 90.3
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 2.2e-48 196.1 162 70.4
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 2.5e-28 129.4 131 52.7
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 5.6e-28 128.3 132 50.8
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.8e-27 125.9 143 51.0
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 6.2e-27 124.8 161 48.4
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.0e-25 119.8 150 48.7
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 2.0e-25 119.8 139 51.8
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 2.6e-25 119.4 148 45.9
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 3.4e-25 119.0 134 48.5
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 4.5e-25 118.6 143 46.2
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 9.9e-25 117.5 152 46.7
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 2.9e-24 115.9 160 45.6
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 4.9e-24 115.2 139 47.5
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.9e-24 115.2 139 47.5
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.1e-23 114.0 143 46.2
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 1.1e-23 114.0 133 45.9
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 1.4e-23 113.6 146 43.8
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 1.4e-23 113.6 135 48.9
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 1.4e-23 113.6 136 47.1
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.9e-23 113.2 146 43.8
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.4e-23 112.8 165 41.8
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.4e-23 112.8 143 43.4
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 2.4e-23 112.8 156 42.3
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 3.2e-23 112.5 148 45.3
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 4.2e-23 112.1 146 45.2
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 5.4e-23 111.7 149 45.6
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 7.1e-23 111.3 143 42.7
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 9.3e-23 110.9 149 45.0
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 9.3e-23 110.9 155 41.9
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.2e-22 110.5 156 42.3
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.6e-22 110.2 147 46.9
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.6e-22 110.2 146 45.2
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 2.1e-22 109.8 154 42.2
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 2.1e-22 109.8 135 43.0
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 2.1e-22 109.8 136 48.5
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 2.7e-22 109.4 137 47.4
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 3.5e-22 109.0 129 48.8
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 4.6e-22 108.6 170 44.7
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 4.6e-22 108.6 165 40.6
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 6.0e-22 108.2 145 46.2
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 6.0e-22 108.2 144 44.4
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 7.9e-22 107.8 151 43.7
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 7.9e-22 107.8 156 43.6
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 7.9e-22 107.8 148 44.6
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 7.9e-22 107.8 149 44.3
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 1.0e-21 107.5 146 41.1
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.0e-21 107.5 151 41.7
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.3e-21 107.1 139 46.0
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.3e-21 107.1 154 42.9
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.8e-21 106.7 138 46.4
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.8e-21 106.7 151 41.1
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 1.8e-21 106.7 126 48.4
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 2.3e-21 106.3 144 46.5
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 2.3e-21 106.3 134 43.3
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.9e-21 105.5 142 45.8
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 3.9e-21 105.5 141 44.7
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 5.1e-21 105.1 152 44.1
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.1e-21 105.1 151 41.1
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 5.1e-21 105.1 140 45.7
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 5.1e-21 105.1 135 45.2
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 4.3e-20 102.1 150 43.3
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 4.3e-20 102.1 141 45.4
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 7.4e-20 101.3 149 40.9
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 9.6e-20 100.9 159 41.5
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 9.6e-20 100.9 135 46.7
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 9.6e-20 100.9 135 46.7
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 1.3e-19 100.5 142 41.5
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.3e-19 100.5 120 47.5
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.6e-19 100.1 140 45.0
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 2.1e-19 99.8 133 45.1
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.8e-19 99.4 159 42.1
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 3.6e-19 99.0 151 39.1
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 3.6e-19 99.0 133 44.4
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 3.6e-19 99.0 133 44.4
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 4.8e-19 98.6 121 44.6
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 4.8e-19 98.6 138 40.6
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 6.2e-19 98.2 151 39.1
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 1.4e-18 97.1 153 43.8
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.8e-18 96.7 149 40.3
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.4e-18 96.3 138 41.3
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.4e-18 96.3 138 41.3
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 3.1e-18 95.9 151 38.4
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 3.1e-18 95.9 151 38.4
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 3.1e-18 95.9 131 43.5
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 4.0e-18 95.5 143 42.7
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 5.3e-18 95.1 146 40.4
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 5.3e-18 95.1 143 40.6
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 2.0e-17 93.2 144 40.3
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 3.4e-17 92.4 147 40.1
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 3.4e-17 92.4 145 39.3
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 5.8e-17 91.7 161 40.4
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 5.8e-17 91.7 138 43.5
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 7.6e-17 91.3 151 37.7
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 9.9e-17 90.9 133 42.1
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 1.3e-16 90.5 162 38.9
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.7e-16 90.1 131 43.5
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.2e-16 89.7 132 43.2
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 2.9e-16 89.4 142 40.8
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 3.8e-16 89.0 133 43.6
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 3.8e-16 89.0 145 39.3
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 6.4e-16 88.2 144 43.1
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 6.4e-16 88.2 144 43.1
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 1.1e-15 87.4 149 39.6
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.4e-15 87.0 142 41.5
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.4e-15 87.0 132 40.9
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 1.9e-15 86.7 145 40.7
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 2.4e-15 86.3 156 39.1
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 3.2e-15 85.9 129 39.5
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 3.2e-15 85.9 145 39.3
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 3.2e-15 85.9 143 39.2
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 4.2e-15 85.5 135 36.3
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 1.2e-14 84.0 137 40.1
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 2.1e-14 83.2 118 43.2
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 2.7e-14 82.8 140 37.9
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 3.5e-14 82.4 135 45.2
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 4.6e-14 82.0 122 37.7
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 7.9e-14 81.3 153 35.3
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 7.9e-14 81.3 141 39.7
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 7.9e-14 81.3 153 35.3
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 7.9e-14 81.3 153 35.3
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 1.3e-13 80.5 141 37.6
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.3e-13 80.5 140 38.6
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.3e-13 80.5 157 35.7
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 1.8e-13 80.1 156 39.1
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 2.3e-13 79.7 135 37.8
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.9e-13 79.0 81 49.4
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.9e-12 76.6 133 41.4
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 8.1e-11 71.2 144 33.3
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 4.0e-10 68.9 97 43.3
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 9.0e-10 67.8 91 44.0
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.3e-08 63.9 72 47.2
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 3.8e-08 62.4 65 50.8
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 6.5e-08 61.6 153 32.0
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 8.4e-08 61.2 138 30.4
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 1.1e-07 60.8 116 34.5
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 1.9e-07 60.1 76 44.7
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 2.5e-07 59.7 90 42.2
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 3.2e-07 59.3 163 30.1
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 3.2e-07 59.3 152 36.8
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 4.2e-07 58.9 167 28.1
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 5.5e-07 58.5 51 52.9
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 7.1e-07 58.2 158 29.7
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 7.1e-07 58.2 76 43.4
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 7.1e-07 58.2 128 31.2
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 1.2e-06 57.4 167 28.1
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.2e-06 57.4 145 32.4
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 1.6e-06 57.0 161 26.7
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 2.1e-06 56.6 161 28.0
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 2.7e-06 56.2 132 31.1
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 2.7e-06 56.2 113 32.7
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 2.7e-06 56.2 76 42.1
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 3.5e-06 55.8 129 34.1
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 3.5e-06 55.8 142 31.0
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 3.5e-06 55.8 144 31.9
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 3.5e-06 55.8 158 27.8
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 3.5e-06 55.8 98 35.7
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 6.0e-06 55.1 137 33.6
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 6.0e-06 55.1 155 29.0
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 6.0e-06 55.1 93 36.6
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 6.0e-06 55.1 149 27.5
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 7.9e-06 54.7 96 39.6
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 7.9e-06 54.7 125 35.2
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 7.9e-06 54.7 94 38.3


User provided reference genes

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