Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.3e-188 662.9 348 100.0
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 8.4e-167 590.5 347 89.3
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 4.7e-117 425.2 348 67.8
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 2.3e-100 369.8 381 59.1
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 3.2e-57 226.5 348 45.1
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.8e-53 213.4 347 43.5
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.6e-51 206.8 359 39.6
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 2.2e-50 203.8 346 39.9
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 4.9e-50 202.6 349 41.0
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 1.9e-49 200.7 349 41.3
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 5.5e-49 199.1 348 40.8
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.7e-48 196.8 351 40.2
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 4.6e-48 196.1 345 42.3
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 4.6e-48 196.1 348 40.2
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.3e-47 193.7 355 40.6
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 3.9e-47 193.0 347 41.5
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 5.1e-47 192.6 345 39.4
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 9.6e-46 188.3 361 40.4
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.8e-45 186.8 325 40.0
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.8e-45 186.0 349 39.3
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 8.2e-45 185.3 347 38.9
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.4e-44 183.7 354 40.1
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.1e-44 183.3 355 37.5
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 4.1e-44 183.0 348 40.2
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 4.1e-44 183.0 348 39.7
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 6.9e-44 182.2 364 39.0
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 9.0e-44 181.8 361 39.3
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 1.2e-43 181.4 344 39.5
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.5e-43 181.0 345 40.3
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 3.4e-43 179.9 335 40.3
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 3.4e-43 179.9 342 39.5
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 5.9e-43 179.1 347 38.6
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 3.8e-42 176.4 348 36.2
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 5.0e-42 176.0 372 38.4
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 5.0e-42 176.0 325 38.8
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.1e-41 174.9 353 36.8
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.5e-41 173.7 357 38.9
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 4.2e-41 172.9 403 37.2
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 4.2e-41 172.9 345 35.9
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 4.2e-41 172.9 347 38.0
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.2e-40 171.4 354 37.9
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.2e-40 171.4 352 39.5
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 2.7e-40 170.2 345 37.7
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.6e-40 169.9 348 40.2
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 4.6e-40 169.5 396 34.8
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 6.1e-40 169.1 332 38.6
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 7.9e-40 168.7 338 36.4
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 7.9e-40 168.7 346 37.3
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 7.9e-40 168.7 346 37.9
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.0e-39 168.3 345 37.4
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.0e-39 168.3 333 37.8
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.0e-39 168.3 353 38.5
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-39 167.9 345 37.4
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.3e-39 167.9 367 36.2
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.8e-39 167.5 342 38.3
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 2.3e-39 167.2 347 37.5
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 2.3e-39 167.2 394 36.3
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 6.7e-39 165.6 333 37.5
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 6.7e-39 165.6 339 38.9
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 8.7e-39 165.2 333 37.8
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 1.1e-38 164.9 356 36.8
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.1e-38 164.9 333 37.5
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.9e-38 164.1 335 37.0
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.5e-38 163.7 342 35.1
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 4.3e-38 162.9 347 37.2
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.2e-37 158.7 325 37.5
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 8.2e-37 158.7 347 34.9
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.1e-36 158.3 148 54.7
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.1e-36 158.3 299 38.1
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 2.4e-36 157.1 374 36.4
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.1e-36 156.4 160 52.5
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.1e-36 156.4 160 52.5
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 4.1e-36 156.4 309 39.2
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 5.3e-36 156.0 347 35.4
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 6.9e-36 155.6 152 54.6
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.2e-35 154.8 325 37.2
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.2e-35 154.8 322 35.7
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 2.6e-35 153.7 363 36.6
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 7.7e-35 152.1 325 37.2
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 7.7e-35 152.1 286 36.4
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 7.7e-35 152.1 350 36.0
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 1.0e-34 151.8 214 43.9
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.3e-34 151.4 339 32.7
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.3e-34 151.4 347 34.9
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.3e-34 151.4 342 33.3
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 2.2e-34 150.6 346 37.6
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 2.2e-34 150.6 347 35.2
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 3.8e-34 149.8 170 49.4
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 6.5e-34 149.1 328 37.5
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.4e-33 147.9 324 35.2
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.4e-33 147.9 351 33.0
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.4e-33 147.9 346 36.4
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.9e-33 147.5 159 52.8
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 3.2e-33 146.7 356 33.7
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 5.5e-33 146.0 375 36.3
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 7.2e-33 145.6 170 48.2
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.1e-32 144.1 353 34.6
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 6.1e-32 142.5 339 31.9
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.0e-31 141.7 373 33.8
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.5e-30 137.9 362 34.5
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 2.0e-30 137.5 333 32.4
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 3.3e-30 136.7 348 33.6
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 3.3e-30 136.7 150 49.3
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 3.3e-30 136.7 333 36.0
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 7.4e-30 135.6 346 36.1
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.3e-29 134.8 345 33.0
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-29 134.8 334 33.8
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 4.1e-28 129.8 268 37.7
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.5e-27 127.9 305 34.4
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.5e-27 127.9 344 35.2
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.7e-26 124.4 162 42.6
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 2.9e-26 123.6 115 55.7
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 5.0e-26 122.9 399 31.3
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 5.0e-26 122.9 348 33.0
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 3.2e-25 120.2 338 32.5
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 4.2e-25 119.8 288 36.1
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 4.2e-25 119.8 153 48.4
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 5.5e-25 119.4 146 47.9
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 5.5e-25 119.4 347 34.6
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 7.2e-25 119.0 115 55.7
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 7.2e-25 119.0 208 41.3
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 9.4e-25 118.6 262 37.4
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 9.4e-25 118.6 336 32.4
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.1e-24 117.5 262 35.5
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 3.6e-24 116.7 99 57.6
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.8e-23 114.4 199 41.7
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 3.9e-23 113.2 350 30.3
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 1.1e-22 111.7 308 33.8
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.0e-22 110.9 399 29.1
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 7.4e-22 109.0 147 41.5
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 9.7e-22 108.6 120 50.0
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 9.7e-22 108.6 310 32.6
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 9.7e-22 108.6 307 32.9
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 9.7e-22 108.6 307 32.9
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 2.8e-21 107.1 309 31.7
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 2.8e-21 107.1 309 31.7
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.8e-20 104.4 285 34.4
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.1e-20 103.6 121 47.9
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 4.5e-19 99.8 355 27.6
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 5.9e-19 99.4 341 28.4
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 3.8e-18 96.7 154 34.4
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 5.0e-18 96.3 355 29.9
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 5.0e-18 96.3 308 31.5
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 8.5e-18 95.5 364 28.6
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 9.4e-17 92.0 332 28.0
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.7e-16 90.5 90 50.0
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.3e-15 87.4 231 34.2
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 4.0e-15 86.7 247 30.4
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.1e-12 76.6 88 51.1
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.2e-11 75.1 106 42.5
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.0e-11 74.3 319 28.2
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.7e-11 73.9 216 32.9
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 3.5e-11 73.6 252 31.3
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 7.7e-11 72.4 115 44.3
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 4.2e-09 66.6 176 29.5
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 6.1e-08 62.8 52 53.8
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 3.0e-07 60.5 103 36.9


User provided reference genes

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