Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 3.3e-128 461.8 251 100.0
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.3e-73 280.4 252 70.6
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.3e-71 273.9 254 71.3
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.0e-57 227.6 249 56.6
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 6.1e-42 175.3 222 54.5
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.7e-39 167.2 225 50.2
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 2.2e-39 166.8 226 51.3
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.4e-38 164.1 226 50.0
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 3.5e-37 159.5 237 47.3
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 7.7e-37 158.3 254 45.3
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.7e-36 157.1 229 46.7
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 2.9e-36 156.4 254 43.3
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 6.5e-36 155.2 225 46.2
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.1e-35 154.5 255 42.7
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 9.4e-35 151.4 225 46.2
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.2e-34 151.0 224 48.2
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.2e-34 151.0 226 47.3
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.6e-34 150.6 292 40.4
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.6e-34 150.6 243 45.3
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.6e-34 150.6 253 43.1
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.1e-34 150.2 229 48.5
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 6.1e-34 148.7 225 46.2
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 8.0e-34 148.3 225 46.2
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.4e-33 147.5 237 43.5
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.0e-33 146.4 226 46.5
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.2e-32 144.4 257 41.6
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.5e-32 144.1 247 42.9
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.0e-32 143.7 260 42.3
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.6e-32 143.3 239 43.1
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 5.7e-32 142.1 257 41.6
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 9.8e-32 141.4 247 41.7
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.8e-31 139.8 263 42.6
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.8e-31 139.8 263 42.6
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 3.7e-31 139.4 252 42.9
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.4e-30 137.5 261 40.6
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 4.1e-30 136.0 228 44.3
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 7.0e-30 135.2 221 47.5
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 9.1e-30 134.8 249 40.6
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 2.0e-29 133.7 249 40.6
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 2.7e-29 133.3 247 40.1
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 4.5e-29 132.5 253 41.1
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 5.9e-29 132.1 253 39.9
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.0e-28 131.3 226 44.2
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 2.9e-28 129.8 241 41.9
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 3.8e-28 129.4 230 43.0
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 3.8e-28 129.4 230 43.0
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 3.8e-28 129.4 228 43.4
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.0e-28 129.0 251 40.2
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.0e-28 129.0 251 40.2
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 6.5e-28 128.6 231 43.3
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 8.5e-28 128.3 254 39.4
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.1e-27 127.9 260 36.9
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.1e-27 127.9 260 36.9
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 3.2e-27 126.3 254 37.4
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 4.2e-27 125.9 228 43.4
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 9.4e-27 124.8 251 40.2
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.2e-26 124.4 230 43.0
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 2.1e-26 123.6 192 44.8
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 6.1e-26 122.1 257 39.3
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 8.0e-26 121.7 138 55.1
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.4e-25 120.9 244 39.3
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.4e-25 120.9 244 38.9
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.8e-25 120.6 226 42.5
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 4.0e-25 119.4 244 38.1
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 4.0e-25 119.4 171 45.0
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 6.8e-25 118.6 226 42.0
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 6.8e-25 118.6 146 55.5
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.5e-24 117.5 136 54.4
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.5e-24 117.5 136 54.4
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 2.0e-24 117.1 236 37.3
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 2.6e-24 116.7 250 37.2
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.4e-24 116.3 226 41.2
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 3.4e-24 116.3 207 40.6
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 4.4e-24 115.9 281 35.9
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 4.4e-24 115.9 136 54.4
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 4.4e-24 115.9 136 55.1
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 5.7e-24 115.5 136 55.1
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 9.8e-24 114.8 226 38.5
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 2.2e-23 113.6 225 38.7
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 6.3e-23 112.1 222 40.5
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 8.3e-23 111.7 232 41.4
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.1e-22 111.3 226 37.6
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.4e-22 110.9 136 52.9
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.8e-22 110.5 197 43.7
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 5.4e-22 109.0 229 38.9
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 9.2e-22 108.2 215 40.5
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 1.2e-21 107.8 250 37.6
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 3.5e-21 106.3 231 40.7
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 3.5e-21 106.3 234 40.2
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 4.5e-21 105.9 232 37.9
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.0e-20 104.8 227 38.3
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 2.3e-20 103.6 136 48.5
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 5.0e-20 102.4 229 38.0
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.9e-19 100.5 229 38.0
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 4.3e-19 99.4 136 46.3
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.6e-18 97.4 254 35.0
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 2.1e-18 97.1 252 35.7
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.7e-18 95.9 224 36.6
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 8.0e-18 95.1 260 35.4
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.0e-17 94.7 91 56.0
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.4e-17 94.4 224 35.7
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.8e-17 94.0 221 37.6
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.8e-17 94.0 124 49.2
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.8e-17 94.0 253 34.8
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 3.0e-17 93.2 73 69.9
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 6.8e-17 92.0 250 33.6
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 6.8e-17 92.0 256 34.0
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 4.4e-16 89.4 179 38.0
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 4.4e-16 89.4 142 43.0
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 7.5e-16 88.6 227 34.8
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.3e-15 87.8 305 29.8
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.3e-15 87.8 230 36.1
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 6.4e-15 85.5 134 44.0
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 8.3e-15 85.1 287 32.8
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 7.0e-14 82.0 223 34.5
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 1.2e-13 81.3 68 64.7
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 2.7e-13 80.1 135 43.0
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.3e-12 77.0 128 41.4
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.3e-12 77.0 128 41.4
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.3e-12 77.0 128 41.4
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 3.0e-12 76.6 133 41.4
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 3.3e-11 73.2 270 31.1
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 9.5e-11 71.6 224 33.5
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 9.5e-11 71.6 133 41.4
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 4.7e-10 69.3 115 40.0
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 8.0e-10 68.6 223 31.4
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 1.0e-09 68.2 211 33.6
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 1.0e-09 68.2 136 37.5
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.4e-09 67.8 142 38.7
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 4.0e-09 66.2 137 38.7
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 5.2e-09 65.9 142 38.0
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 1.5e-08 64.3 59 55.9
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 2.6e-08 63.5 127 40.2
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 7.5e-08 62.0 124 40.3
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 2.2e-07 60.5 57 54.4
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.9e-07 60.1 56 55.4
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.9e-07 60.1 56 55.4
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 8.3e-07 58.5 136 36.8
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 2.4e-06 57.0 221 30.8
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 9.2e-06 55.1 77 54.5


User provided reference genes

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