Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 3.9e-68 261.5 150 100.0
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 1.3e-36 156.8 109 87.2
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 5.6e-27 124.8 111 79.3
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 5.8e-24 114.8 114 58.8
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 7.6e-16 87.8 109 63.3
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 1.6e-13 80.1 73 57.5
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.1e-13 79.7 71 60.6
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 3.6e-13 79.0 113 40.7
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 4.6e-13 78.6 104 54.8
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.4e-12 77.0 107 43.9
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 1.8e-12 76.6 72 56.9
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 2.3e-12 76.3 103 49.5
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 2.3e-12 76.3 111 46.8
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 3.0e-12 75.9 70 62.9
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 3.0e-12 75.9 111 46.8
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.9e-12 75.5 111 42.3
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 5.1e-12 75.1 106 42.5
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 6.7e-12 74.7 73 52.1
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 6.7e-12 74.7 111 45.9
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 6.7e-12 74.7 104 47.1
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 8.8e-12 74.3 108 41.7
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.1e-11 73.9 71 53.5
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 1.9e-11 73.2 105 40.0
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 2.5e-11 72.8 77 54.5
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 3.3e-11 72.4 70 48.6
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 3.3e-11 72.4 105 50.5
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.3e-11 72.4 104 42.3
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 7.4e-11 71.2 103 40.8
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 7.4e-11 71.2 117 44.4
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 9.7e-11 70.9 78 52.6
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 9.7e-11 70.9 110 40.9
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.3e-10 70.5 112 40.2
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 1.7e-10 70.1 72 56.9
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.7e-10 70.1 105 49.5
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.7e-10 70.1 105 49.5
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 2.2e-10 69.7 106 41.5
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.2e-10 69.7 78 51.3
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 2.2e-10 69.7 78 50.0
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.8e-10 69.3 78 51.3
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.8e-10 69.3 78 52.6
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 2.8e-10 69.3 117 42.7
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 4.8e-10 68.6 72 54.2
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 4.8e-10 68.6 104 37.5
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 4.8e-10 68.6 103 41.7
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 6.3e-10 68.2 104 36.5
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 8.2e-10 67.8 78 55.1
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 1.4e-09 67.0 75 52.0
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 1.4e-09 67.0 67 53.7
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 2.4e-09 66.2 71 53.5
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 3.1e-09 65.9 69 46.4
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 3.1e-09 65.9 114 40.4
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 3.1e-09 65.9 71 53.5
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 3.1e-09 65.9 67 52.2
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 3.1e-09 65.9 67 52.2
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 5.3e-09 65.1 103 36.9
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 5.3e-09 65.1 74 48.6
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 6.9e-09 64.7 71 52.1
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 9.1e-09 64.3 113 38.1
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 9.1e-09 64.3 104 40.4
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 1.2e-08 63.9 73 47.9
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 1.5e-08 63.5 76 43.4
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 2.0e-08 63.2 73 47.9
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 2.0e-08 63.2 101 37.6
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 2.0e-08 63.2 101 37.6
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.6e-08 62.8 73 50.7
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.6e-08 62.8 73 50.7
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 2.6e-08 62.8 72 51.4
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 3.4e-08 62.4 73 49.3
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 3.4e-08 62.4 73 49.3
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 3.4e-08 62.4 76 47.4
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 3.4e-08 62.4 101 39.6
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 5.9e-08 61.6 69 53.6
PGR031G2453 Punica granatum HOM05D007590 ORTHO05D007875 1.3e-07 60.5 88 45.5
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 6.5e-07 58.2 106 37.7
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 1.4e-06 57.0 100 38.0
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 1.9e-06 56.6 106 36.8
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 2.5e-06 56.2 75 50.7
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 4.2e-06 55.5 75 41.3
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 7.2e-06 54.7 76 44.7
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 7.2e-06 54.7 76 39.5
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 7.2e-06 54.7 72 43.1
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 7.2e-06 54.7 66 45.5
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 9.4e-06 54.3 75 42.7


User provided reference genes

Program Settings