Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 7.7e-174 614.0 377 100.0
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 2.5e-148 529.3 377 82.0
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 2.8e-147 525.8 379 78.4
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 1.5e-121 440.3 387 68.7
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 1.8e-90 337.0 294 66.3
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 6.7e-69 265.4 371 44.5
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 5.7e-68 262.3 380 43.7
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 1.4e-66 257.7 385 46.8
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 3.1e-66 256.5 385 42.3
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 7.0e-66 255.4 376 42.3
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 7.0e-66 255.4 224 61.2
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 1.2e-65 254.6 378 40.2
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 1.6e-65 254.2 389 41.1
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 1.0e-64 251.5 234 56.8
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 1.0e-64 251.5 394 47.0
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 2.9e-64 250.0 380 42.4
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 3.8e-64 249.6 247 57.5
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 1.6e-62 244.2 245 53.1
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 2.0e-60 237.3 386 41.2
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 3.3e-60 236.5 248 53.6
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 1.3e-59 234.6 230 54.8
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 1.7e-59 234.2 230 54.8
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 1.7e-59 234.2 246 54.1
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 2.8e-59 233.4 230 56.1
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 4.8e-59 232.6 230 54.8
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 6.3e-59 232.3 245 57.6
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 6.3e-59 232.3 401 44.6
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 1.8e-58 230.7 230 55.2
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 7.0e-58 228.8 390 39.7
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 9.1e-58 228.4 390 39.7
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 9.1e-58 228.4 390 39.7
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 2.7e-57 226.9 390 39.5
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 2.2e-56 223.8 390 39.5
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.9e-55 220.7 380 45.3
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 4.7e-54 216.1 242 47.1
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 3.0e-53 213.4 239 51.9
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 1.3e-51 208.0 314 43.3
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 1.3e-51 208.0 233 52.4
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 1.7e-51 207.6 233 51.9
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 3.7e-51 206.5 225 52.0
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 4.8e-51 206.1 230 50.9
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 1.1e-50 204.9 251 47.8
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 3.1e-50 203.4 228 47.4
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 7.0e-50 202.2 234 51.3
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.2e-49 201.4 234 50.9
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 2.0e-49 200.7 254 48.8
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 2.0e-49 200.7 207 51.7
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 2.0e-49 200.7 392 39.3
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 4.5e-49 199.5 223 48.4
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 4.5e-49 199.5 385 36.1
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 2.2e-48 197.2 223 48.4
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 8.5e-48 195.3 250 49.6
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 8.5e-48 195.3 262 46.2
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 8.5e-48 195.3 223 48.0
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 8.5e-48 195.3 359 37.3
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 1.1e-47 194.9 223 47.5
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 1.5e-47 194.5 239 49.4
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 1.2e-46 191.4 254 48.0
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 2.1e-46 190.7 261 47.1
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 2.8e-46 190.3 255 48.6
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 8.0e-46 188.7 253 47.4
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 1.0e-45 188.3 245 46.1
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 9.8e-44 181.8 307 41.0
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 3.7e-43 179.9 378 36.2
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 1.8e-42 177.6 297 39.7
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 7.0e-42 175.6 244 43.0
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 1.6e-41 174.5 243 45.3
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 5.9e-41 172.6 237 48.9
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 5.9e-41 172.6 237 48.9
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 5.9e-41 172.6 370 36.2
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 1.0e-40 171.8 254 46.5
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 1.0e-40 171.8 261 46.7
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 2.3e-40 170.6 205 47.8
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 6.6e-40 169.1 237 47.7
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 8.6e-40 168.7 260 46.5
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 8.6e-40 168.7 308 39.3
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 8.6e-40 168.7 222 46.8
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 1.2e-38 164.9 256 43.4
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 4.7e-38 162.9 405 33.3
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 2.3e-37 160.6 263 39.9
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 3.0e-37 160.2 235 43.8
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 7.5e-36 155.6 197 47.7
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 2.0e-33 147.5 239 42.7
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 3.9e-32 143.3 183 44.8
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 5.0e-32 142.9 159 49.1
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 5.6e-31 139.4 156 51.3
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 5.2e-29 132.9 227 39.6
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 2.0e-25 120.9 246 38.2
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 2.4e-18 97.4 235 33.2
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 3.6e-14 83.6 195 36.4
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 6.2e-14 82.8 223 32.7
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 8.1e-14 82.4 254 33.9
COL.COLO4_10689 Corchorus olitorius HOM05D007666 ORTHO05D009567 1.2e-12 78.6 88 45.5
Solyc08g082240.1 Solanum lycopersicum HOM05D007666 ORTHO05D009567 3.4e-12 77.0 92 52.2
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 1.3e-11 75.1 225 30.7
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.2e-11 74.3 230 33.5
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.8e-11 73.6 244 31.1
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 4.9e-11 73.2 226 28.3
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 3.2e-10 70.5 251 30.3
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 9.2e-10 68.9 221 30.8
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 3.5e-09 67.0 225 29.3
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 4.6e-09 66.6 213 23.0
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 6.0e-09 66.2 230 28.3
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 1.7e-08 64.7 248 28.6
Mapoly0014s0172 Marchantia polymorpha HOM05D029953 ORTHO05D009567 1.7e-08 64.7 247 25.5
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 3.0e-08 63.9 230 29.6
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 3.0e-08 63.9 230 28.3
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 5.1e-08 63.2 205 26.3
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 5.1e-08 63.2 197 25.4
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 8.6e-08 62.4 222 27.9
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 4.3e-07 60.1 221 28.1
AagrBONN_evm.TU.Sc2ySwM_368.250 Anthoceros agrestis HOM05D029953 ORTHO05D009567 9.6e-07 58.9 252 25.8
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 4.7e-06 56.6 235 28.9
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 8.1e-06 55.8 226 28.3


User provided reference genes

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