Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016275.2 Cucumis melo HOM05D001889 ORTHO05D001853 1.0e-52 209.9 113 100.0
ClCG07G011480 Citrullus lanatus HOM05D001889 ORTHO05D001853 2.5e-35 152.1 93 87.1
CsaV3_4G006740 Cucumis sativus L. HOM05D001889 ORTHO05D001853 2.2e-31 139.0 93 82.8
Sed0020938 Sechium edule HOM05D001889 ORTHO05D001853 7.5e-24 114.0 99 66.7
MD14G1131000 Malus domestica HOM05D001889 ORTHO05D001853 5.9e-21 104.4 99 55.6
MD06G1110000 Malus domestica HOM05D001889 ORTHO05D001853 1.5e-19 99.8 99 52.5
FvH4_5g04940 Fragaria vesca HOM05D001889 ORTHO05D001853 8.0e-18 94.0 92 52.2
FAN18G0531 Fragaria x ananassa HOM05D001889 ORTHO05D001853 4.0e-17 91.7 91 53.8
Lalb_Chr09g0332241 Lupinus albus HOM05D001889 ORTHO05D001853 8.9e-17 90.5 94 55.3
Prupe.5G122900 Prunus persica HOM05D001889 ORTHO05D001853 2.0e-16 89.4 98 52.0
FAN13G2042 Fragaria x ananassa HOM05D001889 ORTHO05D001853 3.4e-16 88.6 94 51.1
FAN18G4029 Fragaria x ananassa HOM05D001889 ORTHO05D001853 3.4e-16 88.6 94 52.1
RcHm_v2.0_Chr7g0194131 Rosa chinensis HOM05D001889 ORTHO05D001853 5.8e-16 87.8 91 52.7
arahy.Tifrunner.gnm1.ann1.18SJMB Arachis hypogaea HOM05D001889 ORTHO05D001853 2.9e-15 85.5 90 55.6
arahy.Tifrunner.gnm1.ann1.VRDQ1B Arachis hypogaea HOM05D001889 ORTHO05D001853 3.7e-15 85.1 90 55.6
FAN04G1520 Fragaria x ananassa HOM05D001889 ORTHO05D001853 3.7e-15 85.1 91 51.6
Lj4g0003743 Lotus japonicus HOM05D001889 ORTHO05D001853 1.4e-14 83.2 91 52.7
Manes.02G008100 Manihot esculenta HOM05D001889 ORTHO05D001853 4.1e-14 81.6 91 51.6
Potri.001G089400 Populus trichocarpa HOM05D001889 ORTHO05D001853 4.1e-14 81.6 95 49.5
Sabra01G0065500 Salix brachista HOM05D001889 ORTHO05D001853 4.1e-14 81.6 95 49.5
Phvul.002G300000 Phaseolus vulgaris HOM05D001889 ORTHO05D001853 7.0e-14 80.9 94 51.1
C03p35280 Brassica napus HOM05D001889 ORTHO05D001853 1.2e-13 80.1 94 51.1
Glyma.08G024200 Glycine max HOM05D001889 ORTHO05D001853 1.2e-13 80.1 96 51.0
Glyma.05G218100 Glycine max HOM05D001889 ORTHO05D001853 2.7e-13 79.0 99 48.5
CARHR255690 Cardamine hirsuta HOM05D001889 ORTHO05D001853 1.3e-12 76.6 97 46.4
Duzib068G1189 Durio zibethinus HOM05D001889 ORTHO05D001853 1.3e-12 76.6 93 49.5
TAR375G1146 Trochodendron aralioides HOM05D001889 ORTHO05D001853 1.3e-12 76.6 112 43.8
BcaC01g04652 Brassica carinata HOM05D001889 ORTHO05D001853 1.7e-12 76.3 94 52.1
BolC3t15839H Brassica oleracea HOM05D001889 ORTHO05D001853 1.7e-12 76.3 94 52.1
CiPaw.11G119000 Carya illinoinensis HOM05D001889 ORTHO05D001853 1.7e-12 76.3 92 48.9
THA.LOC104806442 Tarenaya hassleriana HOM05D001889 ORTHO05D001853 1.7e-12 76.3 98 45.9
ATR0602G135 Amborella trichopoda HOM05D001889 ORTHO05D001853 2.3e-12 75.9 94 44.7
GSVIVG01019561001 Vitis vinifera HOM05D001889 ORTHO05D001853 3.0e-12 75.5 91 49.5
AL6G45010 Arabidopsis lyrata HOM05D001889 ORTHO05D001853 3.9e-12 75.1 103 46.6
CSS0033415 Camellia sinensis var. sinensis HOM05D001889 ORTHO05D001853 5.0e-12 74.7 110 43.6
Thhalv10029021m.g Eutrema salsugineum HOM05D001889 ORTHO05D001853 5.0e-12 74.7 103 43.7
BcaB01g02728 Brassica carinata HOM05D001889 ORTHO05D001853 6.6e-12 74.3 100 45.0
Cfa011982 Carpinus fangiana HOM05D001889 ORTHO05D001853 6.6e-12 74.3 95 48.4
AT4G10920 Arabidopsis thaliana HOM05D001889 ORTHO05D001853 8.6e-12 73.9 99 46.5
HPP92_027159 Vanilla planifolia HOM05D001889 ORTHO05D001853 8.6e-12 73.9 111 46.8
CAN.G567.15 Capsicum annuum HOM05D001889 ORTHO05D001853 1.1e-11 73.6 107 45.8
Sp6g06580 Schrenkiella parvula HOM05D001889 ORTHO05D001853 1.1e-11 73.6 98 43.9
A03p29220 Brassica napus HOM05D001889 ORTHO05D001853 1.5e-11 73.2 99 47.5
BraA03t12117Z Brassica rapa HOM05D001889 ORTHO05D001853 1.5e-11 73.2 99 47.5
Carub.0006s2966 Capsella rubella HOM05D001889 ORTHO05D001853 1.5e-11 73.2 101 44.6
Psat7g024960 Pisum sativum HOM05D001889 ORTHO05D001853 1.5e-11 73.2 102 41.2
PGSC0003DMG400012264 Solanum tuberosum HOM05D001889 ORTHO05D001853 1.5e-11 73.2 104 44.2
Actinidia22175 Actinidia chinensis HOM05D001889 ORTHO05D001853 1.9e-11 72.8 106 47.2
Nn3g18977 Nelumbo nucifera HOM05D001889 ORTHO05D001853 1.9e-11 72.8 111 45.0
Haze_09091 Corylus avellana HOM05D001889 ORTHO05D001853 2.5e-11 72.4 96 46.9
Sopen08g030830 Solanum pennellii HOM05D001889 ORTHO05D001853 3.3e-11 72.0 108 42.6
MELO3C033395.2 Cucumis melo HOM05D024297 ORTHO05D001853 4.3e-11 71.6 54 68.5
PGR042G3002 Punica granatum HOM05D001889 ORTHO05D001853 4.3e-11 71.6 97 47.4
QL02p030019 Quercus lobata HOM05D001889 ORTHO05D001853 4.3e-11 71.6 61 62.3
Solyc08g082580.3 Solanum lycopersicum HOM05D001889 ORTHO05D001853 4.3e-11 71.6 109 42.2
TAR629G1262 Trochodendron aralioides HOM05D001889 ORTHO05D001853 4.3e-11 71.6 106 42.5
HanXRQChr10g0313221 Helianthus annuus HOM05D001889 ORTHO05D001853 5.6e-11 71.2 107 40.2
CANSAT21G0525 Cannabis sativa HOM05D001889 ORTHO05D001853 7.3e-11 70.9 91 44.0
Nitab4.5_0008496g0020 Nicotiana tabacum HOM05D001889 ORTHO05D001853 7.3e-11 70.9 106 45.3
TPR.G3382 Trifolium pratense HOM05D001889 ORTHO05D001853 7.3e-11 70.9 99 41.4
Eucgr.E00884 Eucalyptus grandis HOM05D001889 ORTHO05D001853 9.5e-11 70.5 109 43.1
Psat7g024920 Pisum sativum HOM05D001889 ORTHO05D001853 9.5e-11 70.5 102 40.2
Gohir.D03G084300 Gossypium hirsutum HOM05D001889 ORTHO05D001853 1.6e-10 69.7 93 47.3
Gorai.003G078300 Gossypium raimondii HOM05D001889 ORTHO05D001853 1.6e-10 69.7 93 47.3
Nitab4.5_0000798g0110 Nicotiana tabacum HOM05D001889 ORTHO05D001853 1.6e-10 69.7 107 43.9
Medtr8g099650 Medicago truncatula HOM05D001889 ORTHO05D001853 2.1e-10 69.3 101 38.6
TWI81G0658 Tripterygium wilfordii HOM05D001889 ORTHO05D001853 2.1e-10 69.3 109 41.3
Sc22g0004890 Simmondsia chinensis HOM05D001889 ORTHO05D001853 2.8e-10 68.9 106 43.4
Aa31LG9G11200 Aethionema arabicum HOM05D001889 ORTHO05D001853 3.6e-10 68.6 100 46.0
DCAR_018011 Daucus carota HOM05D001889 ORTHO05D001853 3.6e-10 68.6 107 43.0
VMungo0251G0223 Vigna mungo HOM05D001889 ORTHO05D001853 3.6e-10 68.6 101 40.6
Lj2A163G58 Lonicera japonica HOM05D001889 ORTHO05D001853 6.2e-10 67.8 104 44.2
SalBow1G7974 Salvia bowleyana HOM05D001889 ORTHO05D001853 6.2e-10 67.8 98 46.9
Atru.chr9.1927 Acer truncatum HOM05D001889 ORTHO05D009239 8.1e-10 67.4 91 48.4
HanXRQChr17g0534971 Helianthus annuus HOM05D001889 ORTHO05D001853 8.1e-10 67.4 109 38.5
Ca_17466_v3 Cicer arietinum L. HOM05D001889 ORTHO05D001853 1.1e-09 67.0 103 37.9
RcHm_v2.0_Chr1g0359981 Rosa chinensis HOM05D001889 ORTHO05D001853 1.1e-09 67.0 93 47.3
Thecc.03G300800 Theobroma cacao HOM05D001889 ORTHO05D001853 1.1e-09 67.0 91 44.0
VMungo0540G2283 Vigna mungo HOM05D001889 ORTHO05D001853 1.1e-09 67.0 107 36.4
CDE10G1213 Ceratophyllum demersum HOM05D001889 ORTHO05D001853 1.4e-09 66.6 101 42.6
Peaxi162Scf00074g00634 Petunia axillaris HOM05D001889 ORTHO05D001853 1.4e-09 66.6 105 43.8
Rhsim02G0246500 Rhododendron simsii HOM05D001889 ORTHO05D001853 1.4e-09 66.6 122 41.0
unitig_748.g7694 Utricularia gibba HOM05D001889 ORTHO05D001853 1.8e-09 66.2 104 42.3
Cc08_g16290 Coffea canephora HOM05D001889 ORTHO05D001853 2.3e-09 65.9 114 41.2
Gohir.A02G099400 Gossypium hirsutum HOM05D001889 ORTHO05D001853 2.3e-09 65.9 94 45.7
MD01G1082500 Malus domestica HOM05D001889 ORTHO05D001853 2.3e-09 65.9 99 40.4
CsaV3_3G007990 Cucumis sativus L. HOM05D001889 ORTHO05D001853 4.0e-09 65.1 104 39.4
Aqoxy7G00073 Aquilegia oxysepala HOM05D001889 ORTHO05D001853 6.8e-09 64.3 112 42.9
Dinv37513 Davidia involucrata HOM05D001889 ORTHO05D001853 6.8e-09 64.3 107 41.1
FAN10G4194 Fragaria x ananassa HOM05D001889 ORTHO05D001853 6.8e-09 64.3 94 43.6
Ciclev10020119m.g Citrus clementina HOM05D001889 ORTHO05D001853 1.2e-08 63.5 96 40.6
FvH4_7g16761 Fragaria vesca HOM05D001889 ORTHO05D001853 2.0e-08 62.8 96 42.7
Oeu038552.2 Olea europaea HOM05D001889 ORTHO05D001853 2.0e-08 62.8 101 40.6
Carub.0007s3328 Capsella rubella HOM05D011058 ORTHO05D013148 2.6e-08 62.4 61 54.1
Ciclev10023952m.g Citrus clementina HOM05D001889 ORTHO05D001853 2.6e-08 62.4 97 42.3
AL7G47100 Arabidopsis lyrata HOM05D011058 ORTHO05D013148 3.4e-08 62.0 58 56.9
Oeu055033.2 Olea europaea HOM05D001889 ORTHO05D001853 3.4e-08 62.0 62 54.8
MELO3C006017.2 Cucumis melo HOM05D001889 ORTHO05D001853 4.4e-08 61.6 104 36.5
Gorai.007G109200 Gossypium raimondii HOM05D001889 ORTHO05D001853 4.4e-08 61.6 101 40.6
Lsat_1_v5_gn_3_11280 Lactuca sativa HOM05D001889 ORTHO05D001853 4.4e-08 61.6 111 37.8
Cpa.g.sc634.3 Carica papaya HOM05D001889 ORTHO05D001853 7.5e-08 60.8 105 36.2
Prupe.2G189900 Prunus persica HOM05D001889 ORTHO05D001853 7.5e-08 60.8 99 36.4
Sed0013045 Sechium edule HOM05D001889 ORTHO05D001853 9.9e-08 60.5 91 44.0
SGA_v2.0_scaffold305G47995 Striga asiatica HOM05D001889 ORTHO05D001853 1.3e-07 60.1 94 42.6
CANSAT56G4277 Cannabis sativa HOM05D001889 ORTHO05D001853 1.7e-07 59.7 91 42.9
Potri.002G171900 Populus trichocarpa HOM05D001889 ORTHO05D001853 1.7e-07 59.7 104 36.5
Ah.12g052720 Amaranthus hybridus HOM05D001889 ORTHO05D001853 2.2e-07 59.3 104 37.5
Hund27191 Selenicereus undatus HOM05D001889 ORTHO05D001853 2.9e-07 58.9 59 52.5
Ah.05g179470 Amaranthus hybridus HOM05D001889 ORTHO05D001853 4.9e-07 58.2 59 52.5
TWI15G0999 Tripterygium wilfordii HOM05D011058 ORTHO05D013148 4.9e-07 58.2 60 51.7
CAN.G567.16 Capsicum annuum HOM05D001889 ORTHO05D001853 8.3e-07 57.4 93 41.9
Thhalv10023752m.g Eutrema salsugineum HOM05D011058 ORTHO05D013148 8.3e-07 57.4 61 45.9
AUR62023450 Chenopodium quinoa HOM05D001889 ORTHO05D001853 1.1e-06 57.0 69 50.7
COL.COLO4_06276 Corchorus olitorius HOM05D001889 ORTHO05D001853 1.1e-06 57.0 91 39.6
Sc01g0002620 Simmondsia chinensis HOM05D001889 ORTHO05D001853 1.1e-06 57.0 90 42.2
AUR62010864 Chenopodium quinoa HOM05D001889 ORTHO05D001853 1.4e-06 56.6 65 46.2
Haze_15668 Corylus avellana HOM05D001889 ORTHO05D001853 1.4e-06 56.6 59 54.2
Sabra02G0140800 Salix brachista HOM05D001889 ORTHO05D001853 1.4e-06 56.6 104 34.6
EL10Ac1g00257 Beta vulgaris HOM05D001889 ORTHO05D001853 1.9e-06 56.2 59 50.8
EL10Ac5g12940 Beta vulgaris HOM05D001889 ORTHO05D001853 1.9e-06 56.2 109 35.8
Hma1.2p1_0440F.1_g153470 Hydrangea macrophylla HOM05D001889 ORTHO05D001853 1.9e-06 56.2 112 37.5
AT5G42060 Arabidopsis thaliana HOM05D011058 ORTHO05D013148 2.4e-06 55.8 61 47.5
MSTRG.26916 Avicennia marina HOM05D001889 ORTHO05D001853 2.4e-06 55.8 69 50.7
CARHR212510 Cardamine hirsuta HOM05D011058 ORTHO05D013148 2.4e-06 55.8 61 45.9
Migut.A00620 Erythranthe guttata HOM05D001889 ORTHO05D001853 2.4e-06 55.8 107 35.5
Sp2g00260 Schrenkiella parvula HOM05D011058 ORTHO05D013148 2.4e-06 55.8 61 45.9
TPR.G29353 Trifolium pratense HOM05D001889 ORTHO05D001853 2.4e-06 55.8 60 48.3
Aa31LG2G1480 Aethionema arabicum HOM05D011058 ORTHO05D013148 3.2e-06 55.5 61 47.5
Glyma.19G256500 Glycine max HOM05D001889 ORTHO05D001853 3.2e-06 55.5 94 42.6
Hma1.2p1_3248F.1_g334400 Hydrangea macrophylla HOM05D001889 ORTHO05D001853 3.2e-06 55.5 86 40.7
AT1G64490 Arabidopsis thaliana HOM05D011058 ORTHO05D013148 4.1e-06 55.1 61 44.3
BcaB07g31468 Brassica carinata HOM05D011058 ORTHO05D013148 4.1e-06 55.1 61 45.9
BcaC04g22573 Brassica carinata HOM05D011058 ORTHO05D013148 4.1e-06 55.1 61 45.9
A09p14670 Brassica napus HOM05D011058 ORTHO05D013148 4.1e-06 55.1 61 44.3
Mapoly0004s0058 Marchantia polymorpha HOM05D001889 ORTHO05D001853 4.1e-06 55.1 81 37.0
THA.LOC104801367 Tarenaya hassleriana HOM05D001889 ORTHO05D001853 4.1e-06 55.1 91 38.5
Carub.0002s0027 Capsella rubella HOM05D011058 ORTHO05D013148 5.4e-06 54.7 61 45.9
Cfa003792 Carpinus fangiana HOM05D001889 ORTHO05D001853 5.4e-06 54.7 113 36.3
AUR62004504 Chenopodium quinoa HOM05D001889 ORTHO05D001853 5.4e-06 54.7 69 49.3
AagrBONN_evm.TU.Sc2ySwM_228.5176 Anthoceros agrestis HOM05D001889 ORTHO05D001853 7.1e-06 54.3 87 35.6
Manes.05G022100 Manihot esculenta HOM05D001889 ORTHO05D001853 7.1e-06 54.3 108 35.2
C09p17750 Brassica napus HOM05D011058 ORTHO05D013148 9.2e-06 53.9 61 44.3
BolC9t53028H Brassica oleracea HOM05D001889 ORTHO05D001853 9.2e-06 53.9 55 56.4
BolC9t54669H Brassica oleracea HOM05D011058 ORTHO05D013148 9.2e-06 53.9 61 44.3
BraA09t37113Z Brassica rapa HOM05D011058 ORTHO05D013148 9.2e-06 53.9 61 44.3
Zm00001eb361130 Zea mays HOM05D001889 ORTHO05D001853 9.2e-06 53.9 117 34.2


User provided reference genes

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