Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016217.2 Cucumis melo HOM05D005907 ORTHO05D007033 3.3e-113 411.8 215 100.0
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 6.6e-29 131.7 68 98.5
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 4.0e-26 122.5 68 91.2
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 4.4e-25 119.0 68 88.2
Haze_08421 Corylus avellana HOM05D005907 ORTHO05D007033 1.4e-18 97.4 98 54.1
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 3.1e-18 96.3 98 53.1
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 3.8e-16 89.4 68 61.8
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 1.1e-15 87.8 68 60.3
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 1.1e-15 87.8 68 58.8
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 3.2e-15 86.3 68 60.3
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 5.4e-15 85.5 68 57.4
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 5.4e-15 85.5 68 60.3
Manes.17G003749 Manihot esculenta HOM05D005907 ORTHO05D007033 7.1e-15 85.1 68 57.4
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 1.2e-14 84.3 68 55.9
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 1.6e-14 84.0 68 58.8
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 4.6e-14 82.4 68 57.4
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 1.8e-13 80.5 63 54.0
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 1.8e-13 80.5 68 57.4
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 3.9e-13 79.3 62 58.1
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 5.1e-13 79.0 65 56.9
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 5.1e-13 79.0 68 54.4
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 5.1e-13 79.0 68 54.4
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 5.1e-13 79.0 68 52.9
Eucgr.E01152 Eucalyptus grandis HOM05D005907 ORTHO05D007033 6.7e-13 78.6 83 56.6
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 8.7e-13 78.2 68 52.9
Cpa.g.c30909 Carica papaya HOM05D005907 ORTHO05D007033 1.1e-12 77.8 68 51.5
ClCG11G016120 Citrullus lanatus HOM05D005907 ORTHO05D007033 1.1e-12 77.8 61 59.0
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.1e-12 77.8 67 53.7
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 1.1e-12 77.8 68 52.9
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 3.3e-12 76.3 70 55.7
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 4.3e-12 75.9 68 54.4
PSO339G2078 Papaver somniferum HOM05D005907 ORTHO05D007033 4.3e-12 75.9 68 57.4
Peaxi162Scf00550g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 4.3e-12 75.9 69 56.5
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 9.6e-12 74.7 68 48.5
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 9.6e-12 74.7 68 48.5
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 2.1e-11 73.6 65 53.8
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 2.1e-11 73.6 68 52.9
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 3.6e-11 72.8 54 66.7
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 3.6e-11 72.8 67 59.7
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 4.8e-11 72.4 55 58.2
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 4.8e-11 72.4 63 55.6
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 8.1e-11 71.6 62 54.8
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 1.1e-10 71.2 68 52.9
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 1.4e-10 70.9 68 48.5
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 1.4e-10 70.9 63 52.4
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 1.4e-10 70.9 68 50.0
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 1.8e-10 70.5 62 54.8
Sed0019955 Sechium edule HOM05D005907 ORTHO05D007033 2.4e-10 70.1 57 59.6
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 3.1e-10 69.7 94 41.5
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 4.0e-10 69.3 61 49.2
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 4.0e-10 69.3 63 49.2
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 4.0e-10 69.3 55 58.2
ECA233G3754 Erigeron canadensis HOM05D005907 ORTHO05D007033 5.3e-10 68.9 61 45.9
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 5.3e-10 68.9 69 52.2
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 6.9e-10 68.6 94 41.5
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 9.0e-10 68.2 63 50.8
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 9.0e-10 68.2 63 50.8
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 1.2e-09 67.8 68 54.4
Glyma.16G076400 Glycine max HOM05D005907 ORTHO05D007033 1.5e-09 67.4 55 58.2
Aqoxy2G03476 Aquilegia oxysepala HOM05D005907 ORTHO05D007033 2.0e-09 67.0 68 48.5
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 2.0e-09 67.0 94 40.4
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 2.0e-09 67.0 66 47.0
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 2.6e-09 66.6 63 47.6
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 3.4e-09 66.2 63 46.0
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 3.4e-09 66.2 69 52.2
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 3.4e-09 66.2 58 55.2
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 3.4e-09 66.2 58 51.7
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 5.8e-09 65.5 61 47.5
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 5.8e-09 65.5 69 52.2
Carub.0001s3002 Capsella rubella HOM05D005907 ORTHO05D007033 9.9e-09 64.7 60 53.3
ATR0568G210 Amborella trichopoda HOM05D005907 ORTHO05D007033 1.3e-08 64.3 56 55.4
Nitab4.5_0006244g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 1.3e-08 64.3 69 50.7
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 1.3e-08 64.3 63 52.4
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 1.7e-08 63.9 54 55.6
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 1.7e-08 63.9 63 50.8
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 1.7e-08 63.9 63 47.6
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 1.7e-08 63.9 52 55.8
Aa31LG2G14390 Aethionema arabicum HOM05D005907 ORTHO05D007033 2.2e-08 63.5 60 48.3
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 2.2e-08 63.5 68 45.6
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 2.2e-08 63.5 63 50.8
Medtr8g072220 Medicago truncatula HOM05D005907 ORTHO05D007033 2.2e-08 63.5 56 57.1
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 2.2e-08 63.5 60 50.0
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 3.8e-08 62.8 66 50.0
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 3.8e-08 62.8 61 49.2
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 4.9e-08 62.4 61 45.9
BcaB04g18131 Brassica carinata HOM05D005907 ORTHO05D007033 6.4e-08 62.0 54 53.7
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 6.4e-08 62.0 66 40.9
arahy.Tifrunner.gnm1.ann1.UI3LS8 Arachis hypogaea HOM05D005907 ORTHO05D007033 1.1e-07 61.2 54 53.7
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 1.4e-07 60.8 61 47.5
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 1.4e-07 60.8 63 46.0
VMungo0251G3198 Vigna mungo HOM05D005907 ORTHO05D007033 1.4e-07 60.8 55 54.5
BcaC07g37737 Brassica carinata HOM05D005907 ORTHO05D007033 1.9e-07 60.5 54 53.7
BolC8t48118H Brassica oleracea HOM05D005907 ORTHO05D007033 1.9e-07 60.5 54 53.7
AL7G34790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 3.2e-07 59.7 57 49.1
CARHR226160 Cardamine hirsuta HOM05D005907 ORTHO05D007033 3.2e-07 59.7 57 49.1
Aa31LG6G1970 Aethionema arabicum HOM05D005907 ORTHO05D007033 4.2e-07 59.3 56 50.0
arahy.Tifrunner.gnm1.ann1.VB8HUC Arachis hypogaea HOM05D005907 ORTHO05D007033 4.2e-07 59.3 54 51.9
Carub.0007s2186 Capsella rubella HOM05D005907 ORTHO05D007033 5.5e-07 58.9 56 50.0
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 5.5e-07 58.9 82 36.6
Sp7g17980 Schrenkiella parvula HOM05D005907 ORTHO05D007033 5.5e-07 58.9 60 46.7
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 1.2e-06 57.8 61 49.2
THA.LOC104806200 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 1.2e-06 57.8 57 47.4
Thhalv10026210m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 1.6e-06 57.4 57 47.4
Os02g0703300 Oryza sativa ssp. japonica HOM05D005907 ORTHO05D007033 2.1e-06 57.0 55 56.4
AT4G19370 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 2.7e-06 56.6 57 47.4
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 3.5e-06 56.2 61 45.9


User provided reference genes

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