Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 5.2e-244 847.4 476 100.0
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 7.1e-217 757.3 479 90.8
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 1.4e-164 583.6 488 71.9
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 5.0e-146 521.9 486 68.1
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.9e-108 397.1 413 59.3
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 3.2e-108 396.4 483 54.5
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 7.1e-108 395.2 435 56.6
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 3.5e-107 392.9 409 58.4
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.4e-100 370.9 419 56.8
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 1.4e-100 370.9 441 55.1
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 3.2e-100 369.8 447 53.5
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 4.2e-100 369.4 516 47.9
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 6.0e-99 365.5 523 49.1
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 1.3e-98 364.4 488 54.1
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 3.3e-97 359.8 463 52.9
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 7.4e-97 358.6 408 58.3
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 7.4e-97 358.6 488 53.3
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 7.4e-97 358.6 449 50.8
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 3.7e-96 356.3 463 52.3
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 3.7e-96 356.3 486 52.9
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 6.2e-96 355.5 436 53.0
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 2.0e-94 350.5 436 55.3
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 4.5e-94 349.4 524 51.0
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 5.8e-94 349.0 460 51.1
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 4.9e-93 345.9 405 57.5
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 8.4e-93 345.1 444 52.9
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 4.2e-92 342.8 401 57.9
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 7.1e-92 342.0 496 52.6
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 3.5e-91 339.7 415 54.0
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 1.0e-90 338.2 499 47.5
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 1.0e-90 338.2 443 54.0
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.0e-90 336.7 442 53.6
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 6.7e-90 335.5 443 53.5
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 8.7e-90 335.1 449 54.3
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 1.1e-89 334.7 416 54.3
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 3.3e-89 333.2 488 52.9
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 4.3e-89 332.8 365 60.8
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 1.6e-88 330.9 483 51.1
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 2.1e-88 330.5 417 54.7
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 6.3e-88 328.9 434 53.0
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 8.2e-88 328.6 412 53.2
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 1.4e-87 327.8 438 51.4
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.4e-87 327.8 344 61.0
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 5.3e-87 325.9 409 56.0
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 9.0e-87 325.1 408 54.7
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 3.4e-86 323.2 399 55.1
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 3.8e-85 319.7 428 51.2
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 5.0e-85 319.3 357 58.0
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 5.0e-85 319.3 524 48.3
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.1e-84 318.2 326 64.1
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 2.7e-83 313.5 442 47.3
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 4.6e-83 312.8 373 56.0
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 2.3e-82 310.5 392 55.1
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 5.1e-82 309.3 469 44.1
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 8.7e-82 308.5 318 59.4
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.1e-81 308.1 433 50.3
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 4.3e-81 306.2 422 46.7
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 7.4e-81 305.4 411 50.6
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.2e-80 303.9 494 51.0
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.2e-80 303.9 483 50.5
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.1e-79 301.6 421 46.1
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.4e-79 301.2 203 71.9
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 2.6e-78 297.0 451 46.6
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 7.7e-78 295.4 412 48.3
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.0e-77 295.0 498 50.0
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.9e-77 293.5 435 46.4
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 3.2e-76 290.0 426 47.9
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 7.2e-76 288.9 400 51.8
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 4.6e-75 286.2 413 46.2
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.4e-74 284.6 409 47.4
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 1.8e-74 284.3 191 69.6
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 5.1e-74 282.7 471 45.0
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 5.7e-73 279.3 472 44.1
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 9.7e-73 278.5 459 43.8
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 9.7e-73 278.5 472 43.9
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 4.8e-72 276.2 375 48.5
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 1.1e-71 275.0 416 45.2
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.8e-71 274.2 438 48.4
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 2.4e-71 273.9 477 42.6
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 4.1e-71 273.1 471 43.1
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 5.3e-71 272.7 421 47.3
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 4.5e-70 269.6 469 43.7
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 2.2e-69 267.3 438 45.0
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 5.0e-69 266.2 435 45.1
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 6.5e-69 265.8 419 45.3
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 8.5e-69 265.4 423 43.5
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 2.1e-67 260.8 419 47.0
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 2.1e-67 260.8 482 41.7
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 3.6e-67 260.0 202 61.9
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 4.7e-67 259.6 408 44.9
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 1.8e-66 257.7 445 44.0
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.8e-66 257.7 442 43.2
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 3.9e-66 256.5 394 46.7
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.1e-65 255.0 304 55.3
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 2.0e-65 254.2 435 45.5
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 5.7e-65 252.7 173 70.5
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 9.7e-65 251.9 422 44.8
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.8e-64 250.4 329 49.5
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 3.7e-64 250.0 416 44.2
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 4.8e-64 249.6 416 44.2
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 8.2e-64 248.8 474 40.7
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 1.4e-63 248.1 374 50.3
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 2.4e-63 247.3 203 59.1
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 1.5e-60 238.0 591 37.7
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 7.2e-60 235.7 310 55.8
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 1.2e-57 228.4 439 38.7
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 3.1e-55 220.3 369 43.1
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 1.7e-53 214.5 165 64.2
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 9.8e-49 198.7 177 57.6
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 9.8e-49 198.7 177 57.6
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 1.4e-47 194.9 140 68.6
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.5e-44 184.1 280 50.7
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.9e-37 160.6 333 38.1
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 1.1e-36 158.7 139 59.7
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 1.1e-36 158.7 116 67.2
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.0e-34 152.1 107 67.3
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 7.0e-31 139.4 90 76.7
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.0e-29 133.3 91 71.4
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 1.2e-25 122.1 171 36.8
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 3.2e-23 114.0 170 36.5
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 1.0e-21 109.0 147 34.7
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 4.7e-19 100.1 64 75.0
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 3.1e-18 97.4 63 79.4
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 1.2e-17 95.5 62 75.8
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 4.4e-17 93.6 62 75.8
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.2e-16 91.3 63 74.6
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.4e-15 87.8 243 32.1
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 1.2e-14 85.5 82 48.8
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 2.5e-12 77.8 288 34.7


User provided reference genes

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