Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 0.0e+00 1327.8 669 100.0
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1243.8 641 98.3
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1176.4 641 94.2
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 0.0e+00 1141.3 641 89.4
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 3.2e-279 964.9 642 75.2
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 5.0e-277 957.6 642 74.6
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 4.3e-276 954.5 642 73.8
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 7.3e-276 953.7 642 74.5
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 8.9e-274 946.8 642 73.4
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 2.6e-273 945.3 642 74.1
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 5.8e-273 944.1 643 73.7
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 3.0e-269 931.8 642 73.4
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.9e-268 929.1 642 73.2
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 1.9e-268 929.1 646 73.1
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 8.1e-267 923.7 643 73.1
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 1.1e-263 913.3 643 72.3
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 4.1e-263 911.4 644 72.2
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 2.7e-262 908.7 641 72.5
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 3.5e-262 908.3 645 71.9
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 1.0e-261 906.7 650 71.7
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 3.1e-258 895.2 682 67.7
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 9.9e-257 890.2 643 71.1
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 6.4e-256 887.5 643 70.0
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 1.4e-255 886.3 642 69.3
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 3.2e-255 885.2 632 70.1
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 1.6e-254 882.9 643 70.1
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 1.3e-253 879.8 634 71.0
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.1e-252 876.7 645 69.6
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 5.6e-252 874.4 642 69.6
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.8e-251 872.1 641 69.4
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 8.1e-251 870.5 642 68.4
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 4.0e-250 868.2 643 68.7
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.9e-248 862.1 656 67.1
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 2.4e-247 859.0 654 68.3
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 9.3e-247 857.1 641 66.9
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.2e-246 856.7 599 72.6
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 1.5e-244 849.7 650 66.8
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.9e-244 849.4 656 66.5
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 1.4e-242 843.2 662 66.5
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 1.5e-241 839.7 642 65.7
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 1.7e-240 836.3 641 66.9
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 2.4e-239 832.4 643 66.7
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 7.1e-239 830.9 654 67.0
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 3.5e-238 828.6 642 65.7
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 1.8e-237 826.2 642 64.8
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 8.1e-235 817.4 642 64.6
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.5e-233 813.1 644 65.4
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 4.9e-232 808.1 773 58.3
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 1.9e-231 806.2 692 62.0
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 2.5e-231 805.8 642 63.6
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 3.2e-231 805.4 641 63.7
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 1.2e-230 803.5 658 64.0
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 3.9e-229 798.5 643 63.0
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 4.3e-228 795.0 643 62.8
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 5.7e-228 794.7 643 63.5
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 7.4e-228 794.3 653 64.2
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 9.6e-228 793.9 644 63.7
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 3.7e-227 792.0 786 54.7
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 6.3e-227 791.2 641 62.2
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 6.3e-227 791.2 641 61.6
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 8.2e-227 790.8 647 61.7
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 1.1e-226 790.4 658 62.9
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 1.1e-226 790.4 641 63.0
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.1e-226 788.9 806 54.1
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 2.9e-224 782.3 667 61.2
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 6.5e-224 781.2 647 61.2
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 1.9e-223 779.6 691 59.8
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 4.2e-223 778.5 647 61.1
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 2.7e-222 775.8 591 66.3
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 1.0e-221 773.9 641 62.1
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 9.7e-220 767.3 712 57.0
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 2.2e-219 766.1 571 68.8
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 1.1e-218 763.8 645 61.7
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 5.3e-218 761.5 642 61.2
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.4e-213 746.9 641 60.5
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 3.9e-213 745.3 643 62.2
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 2.8e-211 739.2 661 58.9
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 1.4e-210 736.9 631 62.0
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 9.1e-210 734.2 648 61.7
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 5.0e-208 728.4 643 59.9
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 9.4e-207 724.2 643 59.3
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 7.9e-206 721.1 641 58.0
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 1.2e-201 707.2 642 57.3
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 5.0e-200 701.8 632 59.3
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 1.1e-199 700.7 659 55.5
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 6.7e-197 691.4 492 70.7
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.2e-193 680.6 485 70.9
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 3.7e-187 659.1 643 55.5
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.2e-185 654.1 591 58.4
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 2.8e-182 642.9 729 50.9
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 7.5e-180 634.8 644 55.4
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 8.0e-174 614.8 667 49.6
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 3.5e-169 599.4 454 68.9
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 6.4e-163 578.6 644 49.8
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 4.6e-161 572.4 410 68.8
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 3.2e-154 549.7 639 48.2
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 5.4e-154 548.9 448 65.2
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 7.6e-148 528.5 362 75.4
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 5.4e-138 495.7 633 46.3
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.8e-120 437.6 349 64.5
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 4.8e-102 376.3 292 65.4
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 6.3e-94 349.4 657 37.4
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.7e-89 334.0 642 37.2
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 8.2e-86 322.4 238 71.4
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.3e-83 315.1 651 35.8
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 2.0e-76 291.2 223 64.1
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 8.3e-70 269.2 649 33.6
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.0e-67 262.3 151 82.8
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 1.9e-66 258.1 636 31.3
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 1.2e-65 255.4 261 52.9
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.8e-62 244.2 279 49.8
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.2e-52 212.2 151 68.9
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 5.0e-51 206.8 192 57.8
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 5.6e-50 203.4 163 61.3
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 5.4e-45 186.8 337 39.2
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 4.0e-40 170.6 157 56.1
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 9.2e-37 159.5 305 38.4
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 2.7e-36 157.9 270 37.8
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 3.5e-36 157.5 118 66.9
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 7.3e-34 149.8 203 40.9
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 9.5e-34 149.4 280 38.6
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.8e-32 145.2 132 56.1
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 1.5e-26 125.6 195 40.5
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.0e-23 115.2 145 52.4
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.6e-23 114.8 75 68.0
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 3.8e-22 110.9 120 52.5
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 6.0e-20 103.6 81 72.8
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 6.6e-19 100.1 58 79.3
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 1.1e-18 99.4 159 45.3
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 3.3e-18 97.8 105 53.3
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 4.2e-13 80.9 131 43.5
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 9.3e-13 79.7 131 43.5
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 6.2e-09 67.0 90 40.0
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 8.1e-09 66.6 241 29.9
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 8.1e-09 66.6 113 36.3
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.1e-08 66.2 69 46.4
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.6e-07 61.6 67 43.3
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 2.2e-06 58.5 83 49.4
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 4.9e-06 57.4 90 35.6
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 6.4e-06 57.0 511 22.1


User provided reference genes

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